GgaINT0050768 @ galGal3
Intron Retention
Gene
ENSGALG00000009589 | Q9YI58_CHICK
Description
NA
Coordinates
chr7:19665636-19666286:-
Coord C1 exon
chr7:19666179-19666286
Coord A exon
chr7:19665726-19666178
Coord C2 exon
chr7:19665636-19665725
Length
453 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GCGTTTGGTTCTTTTTGCAGCCG
3' ss Score
9.49
Exon sequences
Seq C1 exon
GGTACAGTGGGATTTGAAAATCAGATCAACAAATGCCTGGAACTGGCAGAATATCTCTATACCAAAATAAAAAACAGAGAAGAATTTGAGATGGTTTTTGAAGGAGAG
Seq A exon
GTAAGTATTATTTTCTTTGGTAGGAGCCAAATTTACATGGAATGTAAAGCATGAAGATGACTTAATGCCATCTATGCTGAGATTCCAGGTGCCACCACATACTTAACTGCAAATCTGCTGGTTTTGCTATATCTTGTGTTACCAGTGCCATTGTATGAAGTCTTTTGATAGAATAACATGAATACATTACCTCTTCATTGACTATGAAAAGGAAAATGGAGTTGCCCATGTAGGGAGCCTGGAAAGCAGTTCCCTGTAACACTACATAAAGGTAGAAGGCATTTGCCAGAAAGCATTAGCATCCTAAAATGGGACAATGTACAAGGAGTCTAATATGGCAGATGCAAAAAGAGTTCTGCATTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTGGCTTCCAGACATGGTTGACCTGTATTACTTTATTGATGTATGCGTTTGGTTCTTTTTGCAG
Seq C2 exon
CCGGAGCACACAAATGTATGCTTTTGGTATATTCCACCAAGTCTCAGAGGCATGCCAGACTGTGATGAGAGACGAGAAAAGCTGCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009589:ENSGALT00000015628:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(9.3=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACAGTGGGATTTGAAAATCAGA
R:
CCTGTGCAGCTTTTCTCGTCT
Band lengths:
198-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]