RnoINT0063555 @ rn6
Intron Retention
Gene
ENSRNOG00000000007 | Gad1
Description
glutamate decarboxylase 1 [Source:RGD Symbol;Acc:2652]
Coordinates
chr3:56897168-56900015:+
Coord C1 exon
chr3:56897168-56897275
Coord A exon
chr3:56897276-56899925
Coord C2 exon
chr3:56899926-56900015
Length
2650 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GTCTCCTGAAATTTCTACAGCCT
3' ss Score
6.06
Exon sequences
Seq C1 exon
GGCACTGTGGGATTTGAAAATCAGATCAACAAATGCCTGGAGCTGGCTGAATACCTCTATGCCAAGATTAAAAACAGAGAAGAGTTTGAGATGGTTTTCAATGGTGAG
Seq A exon
GTAGGTTGTCCCCATGGACCGCACACACAGTGCTTCCAGAAAAAACACACGGGGAGTTCCTGGAGCTTTAGACCACCGATGTCTCATCATCTCATTCTAAAGGGTCTTGAACTTTAACTACCCATGACCCCTTTCACCCCAGATATCTTTCTTTACACAACCCCAGGTATGTGGATGTATAAAATAGGCAGACTGAGGATGAATAGTAAAGATAATTATTTTAAAGCAATTCTCTGGTAGATAGTTTTGCCATTTGCTAAAGACTGAAGTAAATTTGCACGCTAACGAGATGGGGGTGGCCGTTGTTTATTTGTACACAAAGTATTGCATTTTGGTTGAATATGTGATAGGCAAGATTCAAAGTAGTGATTCTCAACCAATGGGTTGTGACCCATTTCAGAGGGGTCACCTAAGACTGTCATAAAACAGATATTTACATTATGGTTCATAACAGTAGCAAAACTACAGCTATGAAGTAGCAACAAAAGTAATTTTATGGTTGGGGGTCACTATTGTGTTGATAAAAAGATAAAGAGAAGGGAGGATATGATCTATGGAAGTCTGAGGAAAGGGGGTGCCTTAGCGGGCCCATGCTGAGACATCCCTTCTCCTTGAGGTACCAGTCACATGACGGTATAGTATAGAATAGAGTTTATTCAGGGCGTGGGGAGGGGAGTTGAGAGGAGATAGAGAAATAGAAGAGTAGAGGCTGACCATGAGCACATGGAGAGGAGGAGGAAGGGAATAGGGAGAGAAGGGACAAAGAGGAAGAAGAAGCAAGAAGGCAAGAGAGAGCGAGAGGGAGCAAGAAAGTGAGGAGGGGGCAAGCAGCCCCTATTGTAGTGTCAGGCATACCTGACTGTTGCCAGGTAACTGTGGGGGTGGAGCTTAGACAGAATGCTAACAGTCTCCACAACATAAAGAACTGGATTAAAGGGCCACAGCATTACGTAGGTTGAGGACCACTGACGTAGAGGATCCTTAACATTTTTCAGAGTTGAGTGAGATTTTGATTTTATAGTCTCCAATGTAGAGAATGCTGCTTTGCATTAATATACCATACATATAGTACACATGTGTAGTACATATAGTACAGAATGTCAACAGGAAAATATTAAAAGTCTTTGTTTTCTGTAACAGCCATTTTCTACAAGCACAGAGCCCTTTGTGAGTACTGCAGAAACACTGTTGTTCACAGCGTGCCGCAGTCTGGACTCTGGAGCTGTTTCAGGCAGCCTTCCTTGACACTGTGTGGCATGTGCAGAGCAGGTTGTATACTCACAACCATGTCTGGAGTGAGGTAACATCACGCAGCTCAGGAGGGGCACTGCCAGCAAGCCCCGGATTCATTACATGCTGGTTTAGAGTTCAGCCTTGTCCTTCTATGACCAGAAGTCTTTTTCAATCGCCCACACTCAGTCATACAACCCCATATGAAGTAGCAACACAGAGTTAAAGGCGCTGAGCCCTGAAGCGCATGGCTCTCAGCCAGCTCTTTGACCTAGCGCGTTCCCTGTGGCAGGTCCTACCCCTTCCTTGTTCTTGGCTCTGTCTTGAATTGGACTCTATCCATAAGTATCTCCCAGGCCCAAGAAGCTTAGAGGTCAGGTATATCCTCATCTTCCAAGACTGGCTCTAAATGAGGGCTTGCTCTCCATGGATTCATTATGAAGAGAGCCTGATAAACTGCTTCTGCCTGGGTTCACACACTCCCCCCATTATACACACACAGCAAAGCACCTGTCAGCCCAATACTTCCTGAGTGCCAGATCCTGGGTTATATATTATTGGCCAAAACAAATACTGTGCCTGCCCCGGTGAGGTTTACAATTGAATAAAGAAAGATGGACTCACTCCAGTCCTGGTAAACGAAAGCCTGTTCATACACCAAACAGCTGTTCATAACCTGCTGTAACCGAGCGCCAGCCACAGCGGGCCAGCCAGTGCGCTTCTCAAGATGCCACCTGAGAGTCAGCAAACGAGCACCAGAGTCCTGAGCACGTGCCGTCAGCATGCAGTGCCCACGCGCCCCGTCTCTGGGACCTCTCGGTTCAGGGTTGACACATTCTAGTAGAACAGCGAAAAAGAGACTGATGTCTCCAGACACCTAGAACGGCGCTTCTCAACCTGTGGGTTCTGACCCCTCGAGGGCGCAAATGACCCTTTCACAGTTCGAGTCATAACAGTAGCAAACTTGCAGTTATTAAGTAGCAACGGAAGTACTTTTTTGGTCGGGGGTCACCAAAGGGTCTGCACGTGCAGGCACTATGCAAGCAACATCTAAGGTGAGAGCTGCAAATCTCTCACACCAACAAACAAAAAAATAAGCTAAGCGGCTTCCTCTGCATCGGTATCAAGGTACACAGTTAGTAGGCTTGGGGATCTAGAATGTTCGTTGGGGGGTTGGGGAGCCAACGCTCTTGACCGGAGAGAGTGGATAAGCGGTACTTCCTGTCTGGCTTGTTTATGCGCTGCCCAGGCAATGCTTTGGAGACCTCATTCAGACAACACCTCCCCCGCCCTCCCTTCCCGTACTGGGGAAAAAAAAACAAAACACAAGAATGACTTTTTCCAAAAATGCCTCCAGCTTGTGCTCAAGTTCTAATCATTGTATGTTTGTTTGCTTGATTGTCTCCTGAAATTTCTACAG
Seq C2 exon
CCTGAGCACACAAATGTCTGTTTCTGGTACATACCACAAAGCCTCCGAGGGGTTCCAGACAGCCCTGAGCGACGAGAAAAACTACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000007:ENSRNOT00000000008:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(9.3=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]