MmuINT0067572 @ mm9
Intron Retention
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34551006-34555426:-
Coord C1 exon
chr2:34555346-34555426
Coord A exon
chr2:34551129-34555345
Coord C2 exon
chr2:34551006-34551128
Length
4217 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
CTTTCTCTTTTCCCCTGCAGATG
3' ss Score
14.25
Exon sequences
Seq C1 exon
CTCCTATACCATTTAGAAAGAAAGAAAAACAAGAAAAAGACAAAGATGATCTGGGTCCTGACAGATTCTCAACACTCACAG
Seq A exon
GTTTGTAGACCCATGGGCTTCCTGGCTCCTTCATTCCCAGAGCACATATTTCATAACACTTTTTCTTGGGTGCCATAAGCGTTGCCTTTTTAGAAGAGTATGTTTGTGTGTGTATGGTTGGGAGTATGTTCTTCATGGCTCTGTGGTTTCCCCCTAGAGGCCACAGTGGGTCTCGGTGTGTTCTTCCTACAGCCCACTACCACCATCACCATCCTCATTACCATAACCTGTTTCTGACAAAGCCTGCCTGACAGCTCAGCACCCAGGGACCATGCCACCTGACTGCTGGAGTGTGTGGGGCCGCCTCCAGTTCTCTGCGTGCCCTGTCTCTGGATCACTGGTTGGACAGTTTTCTCAAACACTGATCGTAGGACACTAAATTTATTTTCATCTGTAGTTTGCTCTAGCTTATTCAGGATCACAATGAAATGCTATTTTATCTAATCATTTTATTTTTTTAATGACTAAAGTATTTGTTCAACAGTATTACAAATGCCAACCATTGTGGTAAAAGTTAAAGACTTTTTTTTACAGCTTGAACCATTATAGTTGCTGTCTGATCCATGGCAGAGCTTTAGGGGTCTTCCTTATTCAACACCTGCATTTCTGCAGCTTCTTGGGTACCTTAAAAGCATCCGTGAGCTAGCATGAATGATCATAGTTGAATCTGATAGCGTGCATTGATTCTTAGATGCTGTAGATCATCTAGAGGGGAGTTCACCTCTCAGTTCTTTTTTTCCTTATCTTAATTTTAAAGTGTGTTATCTTCCCATCCTACTAAGTTACAATCAGCTATGGTCTCAAAAGTGACCAGTACAGTACCAATTCTGATGCGTGTTCTAATGTCTATTTGTGCGTGTTAGGTGTTCCTCCATATTTCAGCTTCTATAGCTCTTCCTTATTAGATACAGTAACTTTCACAGTAATAAAGGGTATGAACAGAAAGAGACAGGTTGAACAGGCCACAGTTCCCTGCTGAGAGCAGCCCAGCCTGTCCTATTCAGTTAGCAAATATCTGTTGACCATCTCATGCCAGACATCATCATAGATACTGTGGATATTAAATTAGATTACATATGACCTGGGTTTGTTGGGACCTTGCAGTGTTTTGGGAAGAGTTGGAAAGATACTGTCTTTTGGGCAATGTCTTTGTGTATTTTCCTGTGTTCTTCATTCCTGCTGTTAGAAGTATATACATGTCACAGAGGATGCAGCCACCTTCTTTCAATCCCAGCACTCAGGAGGCAGAGGCAGGAGTTCAAGGCCAGCTTGGTCTACATAGTGAGTTCCAGGCCAGCCTTGGTGAGACCCCGTCTTAAAAAAGAACAGAGGAGAGTACTGTAGTCTCTATAAGTAGAATTACACTGGGTGGAGTAGCTTTGTATGTAAATTGTTTAATGACTTTGAAGAAATTGTAAGTAGTTTTGGTCAATTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTTCTCATGCTGAGATTGGAAGCTAAATAAAGTTCCTGTCTATCTGTTCCCCACCCCATAAAATAGTTCATTTTCTTTGGGTTTGATTGAAGAAGCTTAGCTTTCTTATTGGAGAAATTATGCCCAATCCTAACTAATGATCACTTGTAAGTTACCATAAAATCAGTTTGAAATGTTTTTATATATATTCCTAATTAGCCTGGCCATAATCTTGCCACTCTAGCCACTGGTTTGGTTTTTGTTTTTCTTTTTTTTACAATCTCTCCTAATCTTTCTCAGAGTTTGTATAATGGTGGCTTTTCTGTCACTGAATCGGAGATATATATATATATATATATATATTATATATAAATACAAACATTATATATATATATAAAATGTTTGTATTTACCGTTACCACACTTCATACACTTTCCAGTTTCTACTGGATACAGTTAGCTTTTGAATAATTTTCATTGGCTGTAAAGTAATCTGATTCTACTACATTGCAGCATAACTCTTCTTTTCCTATTGAAATATTTAAGTTATTTCCTGTTGTTTTTTTCTGAAAGTACCTTTGTGCCCATAGGTGGTGGTGGTGGTTGTTGTTGCTGCTGCTGCTGTTGCTGTTGTTGTGTTAACAGTGCTGGGGATTGAGCCCAGGCTTATACAGGCCAGTCAGGCACTCTCCACTAACTGTAACCCCAGCTCTGCACCACAGCTTTTACTTTCATTATTTTTCTAGGATAACGTTTTTTTGAGAAGTATTTTATTAAAGTAAAAGGTAATAAGCAACTTTGTAGTTTAATTGACTGAGGTTAGCCAGTTTACATTTGTCCCTCTCACAGTCCTTGTGGACTCTGAATAGATAACCAGCGGGGCTGGAGAGACGCTCAGCAGTTGCAGCACTTGTTGCCCTTACAGAGAACCTGGGTTCAGTTCTCAGCACCCTCATGTTGGTTCATAGCGACCTGTAACTTCAGGTCCAAAGGCTCTTCTGACCTCCTCAAGCACCAGGAACACACTCGGTACATTTGCATCCATGAAACACTCAAAATATACTAAACAAACAAACAAACAAGAATATTTTAAAAGCTACAATCCAAAATATTACACCTTAAAAGGATTCTGCAGTGGTTGCATTTATATTTTTGAAAAAGCCCACCATTGATTATGAATCTCTTTTCATGACTATACTGTTCTAGTAGACATTTAAATGTATTTGGAAGTCAGATGTGCTCACACCTATAATCCCAACTCACAAGTCTGAGGCAAGAGGTTTGCTACAAGTTCAAGGCCAGTGTAGGCCACAGAGAGACCTGTCCCAAAAAAGAAAAATATGCAAAACACAACTTTGTGACTCCTCTATATAACTTGAGGTATTTTATAGAACCATGAACAGCAGTACTTGTTTTGTGGAGAGGACAGGCCTGTGAGTGTGCTGCCCAGTCCCTGTGCCCTTTGCCTGCTCTGCTGGGGTGTGCTGAGGCCAGTGCTTCTTTGTGCAGTGGTTTGCTGATAAGTGTCCACATAAGATGCCTACAACAAGTTCACTGACAAGTGGTACAAATGCAGTGCTATCAGCTGCTGTTGTCATACACACTCACACACACCCACACACATACATACAGAGAGGTTTTGATGCTATTTTAGAAATGTTTACAAATAGAATTCTACCAGAAGATACACTGCTGGGTTACCAATTGGCCTAGTACAATCTCAGGAGTTTGAGTTTCCATATGGAACCTTATTTTGTATTGAAGATCCATAGCAGTCTATTAATGGCTACTGTTTGAGACTGTAGGCTAATTTGTGTGTATGGTGCTGGGCATCAAACTCAGGGTCTTGTAAATGCTAAACAAGTCTTTACCGCTGAGCTGTATCCCTAGCTTGATGTTTTGAGATAGAGTCTTGCTATTGCTCAGGCTGGCCTTGAATTCATAATTCTCTTATTTCAGCTTCCCAAGTGCTGGAATTATAATCATGTTCCACAATAGCAAGCTAGCTTAACAGTTTTGATAACTGATTTGGTCCTGTCAGTGAAACCATCTGCTCTGTGCATCCTAGACCCCTAGAATGCCAGGGACCATTGTATGAATAAAAATACTGTGTCCTGGCACCGCACTGTCACGGAGAGAAGTGGTGTGATAGAGCAGGACGTTCTGCAGCCTTCAAATGTGATGGAAAGAAGGATTTGCAAAGAAAGGATAGAGAAAGCCATTTATCAAAACTAAAAAAGGGTTTTGGTGTAATTTGAATAATTATTTTTCTCCTTAAGCATGGAGGTGTCTGATTAAGTTGTGTGTATTAAAAAAAAATCAGCAGGCTTAGATAGGAGACCCACAAACTGAAAGCTAAGCCTTGGCTACTTAATGAATTAAAGGTCAGCCTAGGTTATATAGCAAAACTCTTCTATTTGTCCCCCACTCCTACAAAAGAAACCATTGGTAGAAGTTGTGTTACCATGAATTGATAGTTACTGTGTCTTAAGCAAGTACTTTAGAATTCTTTCTGCACTGAACTTTGACACAGTCATGCAGAATTCCAATAGTGTTGAGGTGGAGTGCCTCTCTCTGGCTTCCTGCTTTGGGAAGCTCTTAGACCTAGCAGTGGGGTTCAGTAGGCAGCTGCATGGTGCCTCATAACACTGAGATATGCGCCCTTCTTTAGTCTGACCTCCTAACCTGCCTTTGGGATGCTGCTGCTGCTGGTGTTATACTAACAGCAGAGTAGGGATAAACCCAAGGAACTAATTGTCTTTCTCTTTTCCCCTGCAG
Seq C2 exon
ATGAGCCCAGCCCTAGGCTCAGTGCTCAAGCTCAGGTTGCTGAAGATATTCTGGACAAGTACCGGAATGCCATTAAACGGACCAGCCCCAGTGAAGGAGCAATGGCAAATGATGAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867-Gapvd1:NM_025709:18
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.994 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: