GgaINT0126498 @ galGal3
Intron Retention
Gene
ENSGALG00000000993 | GAPVD1
Description
NA
Coordinates
chr17:10339099-10339951:+
Coord C1 exon
chr17:10339099-10339179
Coord A exon
chr17:10339180-10339828
Coord C2 exon
chr17:10339829-10339951
Length
649 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
GTTCATAATGGCTTTTTCAGATG
3' ss Score
6.85
Exon sequences
Seq C1 exon
CTCCAATTCCATTTAGAAAGAAAGAAAAACAGGAAAAAGACAAAGATGATATGGTACCTGACAGATACTCGACACTACAAG
Seq A exon
GTATGCGGATGGTATCATCACAGCAATTTTCTCTCATAACATGCCCTGTAGATTTCCAGAGTGCCCATTAGATGTCTATTTACAGAAAGGTATGGGCCGTTGTATTTAGTATTCACAGCTGATTTTTGAATAAGAAAGTGAATGATGATTGTTGCCTTGAAGACTGATTTTAAATTGTCATGCTTCCGTCAATATGAATAGTACTGGAATGTCAACTCAGGTCTTCACATATTTATTTTTTAAAGTGTTCATTAAAAAACTTCTGTCCTTATCACAGCTGAGCTGCAGGGACAGCTGCAGACACGTTCCTACGGTAATTCCTTAAGTGCTAAATTAAACTTGATTTGGACCTGGGTGTTTAGTTTTCTGTTTGCTTAGTCATTTCTAGAGGTCTTCAAACATACAAGGGTTGTTTGTGTATATGATATAAATATACTAGCAATCTGATTTTATTTGCTTGCTTTTATAGCGCTTTTTTTTCCCCTCCTACTTTTGCTTTGGACTTTATATTTGAATTGTGGTTACACGGAACACAAGTAGCTATTGGTTGTGCCTAGAATCTGAATGCGCAGGTGTAAATTTTTTGTATTTTGCTTTCAAGTTGGCATAACTCCAAGTTTACTCCTTTTGTTCATAATGGCTTTTTCAG
Seq C2 exon
ATGATCCAAGCCCGAGGCTCAGTGCGCAGGCTCAAGCTGCTGAAGATATTCTGGACAAATACAGGAATGCAATTAAGCGAACCAGTCCTAGTGAAGGAGCTTTAGTAAACTATGACAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993:ENSGALT00000001466:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAACAGGAAAAAGACAAAGATG
R:
CTCCACTGTCATAGTTTACTAAAGCT
Band lengths:
182-831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]