MmuINT0069468 @ mm9
Intron Retention
Gene
ENSMUSG00000034807 | Glt25d1
Description
glycosyltransferase 25 domain containing 1 [Source:MGI Symbol;Acc:MGI:1924348]
Coordinates
chr8:74134923-74136093:+
Coord C1 exon
chr8:74134923-74135343
Coord A exon
chr8:74135344-74135982
Coord C2 exon
chr8:74135983-74136093
Length
639 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TGTCCTGTCTGTGCTCACAGGGT
3' ss Score
10.42
Exon sequences
Seq C1 exon
AAAGGCGTAGCCTTGTCATGCCTCTCTCCAGGACTCACAGTATGACCCGCGGGCCACTTCCCTTTAAGGAGCGTGTCAGGGGTGGGACCTGGATGTGTCCTTCCCGCCGCCGACTCCTTTAAGGCGCGGCCCTCGTCCCCCGGCAGAAAAGCTGCTTAAAGGCGACGCGTGGCGCGATGGCGGCGTTGCCACGCGGGTCACGCGGGCTGCCGCTGCTGCCACTGCTCCTACTGCTGCCGCCGCTGGGCGGCCCGCGCGGCGCGGACGGCTACTTTCCAGAGGAGCGCTGGAGCCCCGAGTCCCCGCTACAGGCGCCGCGCGTGCTCATCGCGCTGCTGGCGCGGAACGCGGCACCCGCGCTGCCCGCCACGCTGGGCGCCCTGGAGCAGCTGCGCCACCCACGGGAGCGCACGGCGCTGTG
Seq A exon
GTGAGCTGCGGGCCCTTGCGCGGTGCACCGGGACTAGGCGGGACTCAAGTCTCTACCGGAGGGAGGTTGCTATGCACTTGGGCTCGGCTGTGCGCTGCGGAGACTCGGTCCTCTTTCTGAGGACCTGAGTTATGTACCCCAGGGATTACGCACTTGAGGGGGCTCGGCTCTATATCCATAGTGCCCGGGCTCGTCCCCACTGCGGCTTGGGACCCCAAGCTGCTGCCTCCTCCCCTCAGGTACTTAGGAATCTGTTCTGATTTGCTGCCAGCCCTCACAGCGAGCTACCATCCTAGAACCTCTGACTCCTTAGAATGGGCCAGGCTGGTGCTTCCAGACCCTTATAGCGAACTCCGGGACTTCCAGATAAGATTCCTGAGGCTCGGGCCAGCATTCCACGCTAACAAAGTTAATGAACTTATCTTTGTGACAGGGTCTCACACCAATGTGCTTTCCAAACCAGCAGGTTCTGTTCAGTTGTGTACTAGTGAGCTGGGTGTCATCTTTACTCCCCTGTCACCGATGGATGGGCAACAGGCTTGGAGTGTAGCGAGTTTTATCCAGGGTGTTATAGCTGATGGGTCTGAGCCAGGTTGGGAAACCCCCAGTGCCATCATCTTGTCCTGTCTGTGCTCACAG
Seq C2 exon
GGTGGCCACAGATCACAACACTGACAACACTTCAGCCATACTTCGAGAGTGGCTGGTGGCAGTGAAGGGTTTATACCACTCTGTGGAGTGGCGACCGGCAGAGGAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034807-Glt25d1:NM_146211:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PU(21.5=31.7)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=FE(30.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGATGTGTCCTTCCCG
R:
AGTGTTGTGATCTGTGGCCAC
Band lengths:
358-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: