MmuINT0071197 @ mm10
Intron Retention
Gene
ENSMUSG00000091455 | Otogl
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107866594-107869602:-
Coord C1 exon
chr10:107869478-107869602
Coord A exon
chr10:107866804-107869477
Coord C2 exon
chr10:107866594-107866803
Length
2674 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ACAGTTTCTTCATCTGTTAGTTG
3' ss Score
4.91
Exon sequences
Seq C1 exon
TTCTCCATCAGGCATGATCGAAGGAACCCCACAGCTCCACGCACATGCGTGGAGAGTCTCCTCCACGTGTTTCGCGCCTGTCCATGTCCCGATGGTGGATCCCTGCAATATTAACCAACAGAACA
Seq A exon
GTAAGTCCTCCTTTCTACACTTAGACTTAGGGGAGATGTTCAATATGCAACATTAATTTCATAATCTTATGTTATGATTTTAAATTATGATTTATTCATTACGCCAAGAGCCCCGCTGTTCCTTGTGTGCTTTTTGGTCAAGCCTATGCTACGTCCACGATTTTTAAGTGCAATTAAGGCTATTGAAAAGAACAACAAACAACCCATTCTTTTACATTTTAAAAATGTACACGTCATATGTATTTATGACTTTCTTCCTTTCAAACACAGGCTGTATTTTGGAGGTTTCGGAGGCAGGAAACACTCGAAGACTGCGGTTATAGTTTCAGGATGCTCAGCAACAGTCTCATAGTGTGAGAGCGCAAGCGCATCTCGTCTTTATTCCTACTCAGATCATCTGTTGTCGCTCTGTAAGCAGGGAGCCCACACCCAATGATTGGCTTGTGCTATTAAGTGGGCAACTCTCTGAGAGAGTCATGTTCCAGCTTTGCAATTTGCAGGAGCAACACAATTCACATGACTAGAATTTTACACACACACACACACACACACACACACACAGACACACAGACACACACACACATCTGACACTGGCTGAATCCATGTTCAGTCTCCACATTTTGTACTCGTTGTGTGTGAGTGCTAGGCTGCCTGTTTACTAGCTTTTATTGTAAGCTTAGTTCGAATGTACTAGGGAAGAACAGATAAACTTGCACTCAACACATAACAAAAGACAGCAATTGTTTTATCCCAATGAGGGCTGTTTATTCTCCCTGTCTCTGTCTCTTTCTCTATGTCTCTCAGTCTCCTTCTGTCTCCGTCTCTATGTCTCCCTTTCTCTGTCTCTCTCTAATCTCAAGATTAGAGTCTTGGCTTTTATGTTTTACTACTTTTAAATCCAGTTCCTTTTTCCCTCCATTCCATCTCCGTATTTTAAAAACAAATTTACTTCTTCAGGTAGTTTCACTTGACTTCTCGCGTCTTGTTTCTAACTCTGATGACTTCCTTTTCGCCATTGAGGTGACTTTGTTATTAAGTTCCTATGTAAAGGTTTCGGTGGAGTTCCCTTGATGAGCTGCCTCTTCCAGCTGTCTTATTTTATAGCTGTCACTACGCACCATTTTATCGTATTTTCCACCCCCCCACCCCCCCACCCCACTATGTCTTCTGTGGTATGCGCTTCAGGGTTTTCTTTTCTTTTTTACTTTTGCTGGAAATTGTGATTTCATAAAAATCCCAAACAGGTAAATTCACAAAGACAGGAAAAGAAAAGAAAATAGACAAAAACCAACTACTCTCAACAGAACTCTGGATATTTTTCTCACGAGAATTTTTTTTTTTGAGTTACTCTTTACTTAATGACAGTGGAAATATGTTTTGATCTGCAAATTCTTAGAGCACAACGGAGTGGCCTTGCCAGTGCGTTATTTTGCTCTTTCAGGACTCTTGGGATAAGGAATTTGTCCACCAACAGTGTATAGTCATTTGTTTCCCATATGTACGCTTATTTAAGGCAATAAAATAGTAGTTGGGTAACTACCAAGATATTTATTAATAATAAATATGCCTTCGATCTGGGAGGAGTGGGATGGTGAATACGATCTAAATACATTGTAGACCATTCTTAAAGAATTAATGAAAATGTTATCTTACAAACTGAATACGCTTGACATTCTCAACAAAACGCATTCAGTATTGTTCCTTGAGAGTGAAAAGGACCTGTTATCCAGCAGTCATTTAGTGACACTGACAATATGAAGACTGACTGAGTTTTATCTCTGAGGGAATCAGTTCAAGTGAGGTCCACTTACATCACAGAACCTTGGACCTCACCTTATCTCCTTTCTCTGAAATGACAGTATCTCCCCGGGCTTGTCACACCTGTTTGGCCAGTCCTGAGCAGGGTTGTTCTTGCTCAGCACTGACTTGAAGGCGTGATGGTAGGATCCTGCTTTAAATAATATAGTGATAATTACACCTCATAGACATCAGAGTGGACTCTAATCCCTAATTTCTATTCATTATTCTCCCATTTATTCTACCATTTTTTCACACGTGGATTTATTAATCAAACACAACTGAGCTTCTCATGTTTGGACACTGTGCATTGTGCTGAATGACTGTGGCATCTGCCCCATTATCTTTCACCCATGAGATTCCATTGGGATGCAGTGATTGCCTGTCCTGGGAATAATGGTGTTTTCTACAAACCTGTCATTACACCATCATTAGGAAGCACTTTTGTTATACACGGGGAGGTCTGGAGATGATAAGCCCCAGTTCCTCACAGCAGGCTTCCCGAGGTGATCCTCCAACATGGGCTCACTGTGGTTATCACTTGTACCAATCCTTTTGTTGGTTATGTTATTCAGGTACACTAGATTTTTTTCTTTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTTCCTTTTCTTTTTTCTTTTTTTTGGTTTGGCTCAAAGAGGATTGAATGTGGACTCAACGCTGTTTCCTGTGTAAGTTACTGAACTTCCTGGGACTCACTTAAAGGATATGTTTCTAGAAAAGGAAGATACTTGAGTAGTTTTGGTACCCCATTCTTAGGGTAATCTCTGGTTGGTATAAGAAAGACTCACAGTTTCTTCATCTGTTAG
Seq C2 exon
TTGGGTATGCAGCACACTGTGATGTCATCCACCAGGAGCTCTTTGCTCCTTGCCATGTCTACGTCAGTCCCGGGCTGTACTACCAGTTGTGTCGCCACGATGCCTGCAAATGTGGGAGCCCCTGCCTGTGTAACGCTCTCGCCCACTACGCCTACCTGTGTGGTCAGCGTGGTGTGCCCATTGATTTCAGAGCTCACATCTCCTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455:ENSMUST00000165341:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(3.3=11.6),PF087426=C8=PU(0.1=0.0)
A:
NA
C2:
PF087426=C8=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types