RnoINT0106101 @ rn6
Intron Retention
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51825281-51828370:+
Coord C1 exon
chr7:51825281-51825405
Coord A exon
chr7:51825406-51828160
Coord C2 exon
chr7:51828161-51828370
Length
2755 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GCGGCGTCTTTGTCTGTTAGTTG
3' ss Score
5.5
Exon sequences
Seq C1 exon
GTCCCCTTCTGGCATGATCGAAGGAACCCCACAGCTTCACGCGCATGCGTGGAGAGTTTCCTCCACGTGTTTCGCGCCTGTCCATGTCCCGATGGTGGATCCCTGCAATATTAACCAACAGAACA
Seq A exon
GTAAGTCCTCCTCTCCACACGTAGACTCAGTAGAAGTGGCCAATATGTTCTACCGACTTTATAATCTTATGTTATGATTTTAAATTATTTATGCATTAAGACTAGAGCCCTGTCGTTCCTTATGCGCATTTTGTTCAATCCTGTGCTAAATCCATGGTTTTTAAGTGCAGTTAGGGCTTTTGAAAAGAACAGCAAACAACCTATTCTCTTACATTTTAAAAATTTACACATTGTAGGTATTTATGGCTTTTCTTCTTCTCAAACACAGGCTGCATTTTGGAGTTTTCCGATGCAGGAAATGCTCGAAGACCGCGGTTATAGTTTCAGGAAGCCCCACTTCAGTTTCATAACGTCTTGTTTTTATTCCTATTCACGGCATCTGCTATCGCTCTGTAAGCAGGGCCCACGACCCAAAGATTGGCTCGTTCTGTTAAGTGGGCAACAGTCTGACATAATCATTCTCTAGCTGTGCAATTTGCAGGAACAACGCAACTCACATGCTTAGAATTTGGACACACACACAAACACACACACACACACACACACATACACACATACACACACACACACACAAACCTATGTGCATGTCCACCAAATACATTTTAAACTAAAGTCACTATAAACCAAATCAAAGGCTAGTTTGCTTCCTTCCCAATTAAAGGAGTCTCTCTGGACAAAATCTAATGTTAGTTAGGTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTACTTTGCCTAGTTTACCACTTTCATAGAGTTAACTTCTATATGTTACTAACATGGGCTGGGAATCCATATTCAGTCTCCACATTTTGTACTGGTTGTGTGTGAGCGTTATGCTGCCTGTTTTTATTTCAGGCTTAGTTCGGATGTACTGGGAAGAACAGATAATCTTGCACCCGACACTTAAAAAAAGAGCGATCTTTTTATCCCAATGACGATTGTCATTCTCCCTGTCTCTGTCTCTTTTTGTATGCCTCTCAGTCTCTTTCTGTTTCTGTCTTTATCTCTCCCTATCTGTGTCTCTGTCTCTCCCTAATCTCGAGAGTAGACTAGAGTCTTGGCTTTTATGATGTACTACTTTTAGATCCATTTCCATTTTTTCCTCCATTTCATCCCAGTATTTTAAGAGCAAATTTACTTCTTCAGCTAATCTTACTTGGTTTCTCATATCTTATTTGTTTCTAACCTTGATGATTTCCTTCTTACTAGTGTGGTGACTTTGTTACTTATTAAGTTACTATGTGAAGGTTTTGGCGGGGTTCACTGGATAAGCTGTCTCTTCCAGCCGAGTCCTTATTTTAGAACTGTCACTATGCACCATCTTACCTGTGTTTTTCATCCCTTTCCTCCCACACTCTGTGTCTTCTGTGGTATATGCTTCAGAAGTTTCTTTTTTACTTTTGCCGTGAACTGTGATTTCATAAAGATCCCAAAACAGGTAAATTCCCAAAGACAGCAAAAGAAAAAATAGACAAAAGCCAACTGCTCTCAAGAGGACTCTGCATATTTTCTCACAAGAATTTTCCTGAGTTACTCTTTATTTAATAACCGTGGAAATACATTTTGACCTACAAATTCTTAGAGCCCAGTAGAATGTTCTTACCAGTGCGTTATTTTGCTCTTTCAGGATTCTTGGAGTGAGGCATTTGTCTAACAACAGTGTATAGTCATTTGTTTCACATATGCACACTAATTTAATGCAAAAAGTAGTACTTGGGTAACTACCAGGATATTTATTATTAATAAATATACCTTGGATCTGGGAGGAGTTGAGGGAGGAGTGGGATAATACATTGTTTAAGTTCTTAAAGAGTTAATGAAATTGTTACAGTACAAATGAATATGCTTGACGTGCATTCAGCATTGTTCCTTGAAAGTGAAAAGTATCTGATGTCCATCAGTCTTTCAATAACAATGACAATACTAAGGCTGAGTGATTTTTATGGCAGAGGGAATCAGTTCCAGTAAGGTCCACTTACATCACGGAACCACATACCTCACCTTGTCTCCTTTCTCTGAAGACAGTATCTCCCCGAGCTTGTCACACCTGTTTGTCCAGTCCCAAGCAGTCGGATTTGCTCAGCACTGACTTGAATGTGCTGTTGCAGGGACCTGCTTTGAATAAAAATAGAGAGAATTACATCTCACAGATGTCAGGATGAATGGATTCCAATCCCTAATTTCTATTCATTTATTTTTCCATTTTTGTCACACATGAATTTATTAATCAAACACAACTGAGCTTCTCGTGTTTGCCAGACATTGGGCAGGGTGCACTGCGTTAAGTGACTCAGTGGCATCTGCTCCATTGTTTTTTACCCACAAGAATCCACTGGAATGCAGTGATTGTCCCTCCTGAGATCATGGTGTTTTCTACAAACTTGTCATTACATCCATTATCAGGGACCACTTTTGTTATGCACACAGGGGCCTGGAGATGATAAGCCCCAGTTTCTCACAGTTTCCTGAGGTGATCCTCAGGCATGGACTCACTGTGGTTACCACTTCTGCCAATCGATCCTTCCATTGCATACATTATTCAGGTACACTAGATTTTTTTTGGTGGGGGAGGGAGCTCAAAGACGACTGCTGAGCTTACTAGCTCTCATTTAAACGATACGTTTCTAGAAAAGGGAGCTACTTGAGTAGTTTTGGTACCCTGTTCTTAGGGTAATTGCTGGCCTGGCATAGGGAAATCTCACGGCGGCGTCTTTGTCTGTTAG
Seq C2 exon
TTGGATATGCAGTGCACTGTGATGTCATCCACCAGGAGCTCTTTGCTCCTTGTCACGTCTACGTCAGTCCAGGGCTGTACTACCAGCTGTGTCGACATGACGCGTGCAAGTGCGGAAGCTCCTGCCTGTGCAATGCTCTTGCCCATTATGCCTACCTGTGTGGTCAGCGCGGTGTGCCCATTGACTTTAGATCTCAGATCTCGTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316:ENSRNOT00000043774:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(3.3=11.6)
A:
NA
C2:
PF087426=C8=WD(100=98.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]