MmuINT0071276 @ mm9
Intron Retention
Gene
ENSMUSG00000049897 | Gm711
Description
predicted gene 711 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26802764-26804948:+
Coord C1 exon
chr2:26802764-26802847
Coord A exon
chr2:26802848-26804831
Coord C2 exon
chr2:26804832-26804948
Length
1984 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
CTATGCTGTGTACTCCACAGGGC
3' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTCATGCAGAATTTCTCCAGTCGACCAGAGGTCCAGCTCAGAGCCATTAACAAGTTGTTGACAATGCCAGAGGACCAGCTAG
Seq A exon
GTAAAGGTCCTGTGCCTTCCTCAGACTCCAGGAAAGGCTGGGAGGTGGCGACTGCCAACCTTTTACTACAGACTTTTCTGGCCAGGACTACTAACTGGGACTGATTGATTCTGTGCTTACTAGCAGAGGAGGGTGGGAGAGAGGCTGGCTACTCTGCATGGTTTCAACAGGTCAACAGGAAATCCATCTAGCATCAGGGAGGCCAAGGCAAGAAGATTGAGAGCTAGCCAGCCTGATCTATAGGGAGTTAAGGCTTGGGTTTTTGTTTTGTTTTGTTAAACAAACAAACAAAAAACAAAAAGAGTCTTTTGGGAGGGACATGGTGGTACGAGGGGTAGATCCTAGGACCTTGTGCAATGCTGGTTAACTGAGCTACCTCCCCAGCTCTTGTTTGTTTGTAGTTTGAGAAAGTATAAATTGCCAATGCTAGTAGTCTCAAACTCGATGTGTGGTCCAAAAAGTCCTTGAACTTGTGACCCTTCCGCCTCAGAAGTACCTGCAACTACAAGCATGCACCATCACACCTGCCCCATCATCTCTGTAGTGGGCATCTGAGTTGCTTCTTGTTTTCTACTTTTATAAACAGCATTACGACTGATCACCTGGCATACCAGCCACTTGGCATTCTGCCTGTATGTGCCTGTCAGATGTACATTTGGATATCAGAGTGTGAACACTACATACCATCTGTCGTAGAGTTTCCATTGCTGTAAAGACACACCATGATCAAAGCAACTCTGATAAAGGACATTTAATTGGGGCTGGCTTACAGGTTCTGAGGTTCAGCCCATTATCATCATAGGAGGAAGCATGGCAGTGTCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCCACTTCTTGTTCTAAAGGCAAACAGAAGACTATCTTCCAGACAACCAGGAGGAGGGTCTCAAAGCCCATCCCCACAGTGACACGCTTCTTCCAAAAAGGCCACACCTCCTAATAGTGCACTTCCTGGGCCAAGCATATTTAAACCACCACACCAACCTTCATAGGCATACCAACCTGGCCCCCTACCAGATTGCTTGAGAACAGCTCTTTCCCAGCATTGCTTTCGATGGGTATTAAGCTTCTTGGGAAATTCTGCAAACGTGCTTTCCTGTCTCTCCTGCTCAAATATCACACCTGTATGGCATCCATATACTCTTTCCTTCCTGAAACCTTTCATCTCTTCACCCACTCACCTTATCCATTCCTGTTTACATACCTGCCCAATTATGTACCTATTCATACAGAAAACACATCCAAAGGGCACCAAAGATCTGTCCCGGTGGCTAGGGCAGTGGAGATTACTAGAAGACTGAGATGACCCCTAACGAGTTAACAGGTCCCTCATATTGGCCATTACTCTCCCAAAGTCCCTTTTATAGCTGAACTGTGACAAAGATAAAGTCCAGGACAAGGTAGATTTGCCTTTTGGGGAAATGGGCTATAATGCCCAACAGTGGGCCTCACCCACCACCCAGAGCTGCCTCTTGCTCAGCCTCATCAGAGTGGGTTTGCTGTAGCTGTTTCCTGGGAACCAGTAAGATCCTTAGCACAATCCAAGTCTCAGCTCAGTCGCAGCCACAGGCCCTGGAGTCACACAGTCAGGCTGAGTTTACACAGCTCTGCAGTGCCTAATGCTCATCACTGCCTCTCAGCTTTGTTCTGAAAGTGAGGGCTGAAAACAGAGACCTGTTTCATGAGGCTGCTCCAAGTAAATGCCTTGGCAGAGCTGGGCACGGTGTCATGTACCTGTGGTCTGTTACTCTGGAGGCTGAGGCGCAGGAACTCCAAATTAGCCTGGACAACCCAGAAGGTAGACCTTGGCAGATGATCAACTGCTCGTATTCTATGAACACGTGTGCTGGTCACCCTTCTCTGCCCTTGGGTTCACCCACCTGGATCCTCTGGGTATCATGTCTGGGTCACACAGTCCAGCTCCTCCTGTGCTCCCCCTATGCTGTGTACTCCACAG
Seq C2 exon
GGCTGCCATGGCCCACAGAGCTGCTGGAAGAGGTGATCAGCATCATAAAGCAGCATGGGCGGATCCTGGATATTCTGCTCAGCACCTGCTCCCTTCTGCTGCGTGTTCTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-Gm711:NM_198628:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCAGAATTTCTCCAGTCGA
R:
CTTGGCCAAGAACACGCAGC
Band lengths:
198-2182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: