MmuINT0071277 @ mm9
Intron Retention
Gene
ENSMUSG00000049897 | Gm711
Description
predicted gene 711 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26804832-26805685:+
Coord C1 exon
chr2:26804832-26804948
Coord A exon
chr2:26804949-26805544
Coord C2 exon
chr2:26805545-26805685
Length
596 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TCTTTCCTTGGCCCAATCAGCAC
3' ss Score
4.21
Exon sequences
Seq C1 exon
GGCTGCCATGGCCCACAGAGCTGCTGGAAGAGGTGATCAGCATCATAAAGCAGCATGGGCGGATCCTGGATATTCTGCTCAGCACCTGCTCCCTTCTGCTGCGTGTTCTTGGCCAAG
Seq A exon
GTGGGCAGGGTAGAGGAGCTCTTCCCTCCCAGACCCTCTGTCTCTTCAGTTCCTTCAACTTCCCACCCATCCCTAGCATCTGCCTCTCCAGTCTGTTGTTCCCTTTTGTGCCTATGTGACTCCATCTCAGAGTGAGAGAGGGCATAGTTGAGTCTGTATATACTGGGTCTACATGGGGCCCGATGCAGCCTGCTGGGACCCTGGACAAGTTCCCCAGCTATGACACAGGAGTTAGATAGGTTGGTCTTCTGGGCTTTCTTGACCAGGAAAGGTTTGGAGGATGTGGTTGCCAGCAGGGGACAGCACTACACTGAAGAACTTACCTAGTGCCATCTTTAAGCCTGGAGCACCTCGTTACCCTTTTACCTTTCCAGTCTTAATACTGAGCCTAACCTCCACACAGACTAGGTCTTTTTCTCAGGGCTGTGTGTCGAATCCAGGTCCTCTTGCATGCCAGGCAATCACTGTACCACTGGGCAAGAGCCCATAAACACTTTAATTCCAAGAGGTGATGTTATTCCCAGTGAGGGAGGACACCTTTCCATCTTAGAGCCCTAGCTGTGGGTTGACTGATGTTCTTTCCTTGGCCCAATCAG
Seq C2 exon
CACTGGCAAAGGACCCAGAAGCTGAGATCCCAAGGAGCAGTTTGATCATCTCCTTCCTGATGGATACCTTGCGGAGCCATCCTAACTCTGAAAGGCTTGTTAATGTGGTCTACAACGTGCTTGCCATTATTTCCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-Gm711:NM_198628:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCATGGCCCACAGAG
R:
TGGCTGGAAATAATGGCAAGCA
Band lengths:
254-850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: