MmuINT0071289 @ mm9
Intron Retention
Gene
ENSMUSG00000049897 | Gm711
Description
predicted gene 711 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26799397-26801080:+
Coord C1 exon
chr2:26799397-26799512
Coord A exon
chr2:26799513-26800961
Coord C2 exon
chr2:26800962-26801080
Length
1449 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTCT
5' ss Score
2.57
3' ss Seq
CACCTTGATCCTGTCCGCAGACC
3' ss Score
10.71
Exon sequences
Seq C1 exon
GAACCTCAAGCCTTCCAACATCGTCCTTGTTAACAGTGGCTACTGTAAACTGCAGGATATGAGCTCCCAGGCACTGATGACCCACGAAGCTAAGTGGAATGTCCGAGCAGAAGAAG
Seq A exon
GTGTCTGGGGAAGACTGGGAATGAGTGGCAAAGGAGGTGGTGACTCTTGGTATCCAGAGGGCAGTGGTTACTTTTGGGGCTGGGCTTTTTAACTCGGAAGGTCTAGAGATCTCCAACCTAGGGAATAACACATTAGATGTGCCACTGTGGGAAGGTGCAGGGTCCAAAGGACTCCAACACATGTAAAAGAGATCCTTGGGGAACAAAGCAATGGTTGTGGTCCCCTTAAGATGTTAATTCTTGTGGGGGAAGAAAGACCCAAAAAGGACAGAAGCTACAAACAGGAGTACAGAAGTCCTCTGGGATGTAGGCACTGACTATGCATTTTAGACAGAAATAGTCCAGGAGATGGAATGATGTTAGAGTAAAAGGGGTGGAGTATATCAAGCCTATAACAGCTGTCACAACAGACAGAGCAACCTGGGAAGAGACTTCAGAGTCCTGTTGTGGCAATGGTTGTCCTTGGCACACAGAGGGTAGGTGGGCAAGTGGATCGATGGGTGGACAGGTGGTTGGGTTGATGAGTAAGTGGGTACAAGAAAGGGTTATATGGGGCTGGAGGGATGGCTCAGCACTGATTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCCTCATATACATTAAATAAATCAATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAACTTTAAAGAAAAAAGAAAGGGTTATATGGAGGTATCGATGGGGTGTGTCCTTGGAGTCCGATCCTTCACTGTTTGGCTGGGGATTGGAGGTTTAGAAATGGAGTGACTACCTGAGTCCAGTTAGAACAGGGTAAGGGCACTACACTGGTGGCTCTTTCTGCATGGTTTAGGAATAAGGAAATTCAGCCAGAACTTTGCCCTAAGCTCCTAACATTTAGAGGGGATGAGCTGTTCAAAGAGGGCTACGCTTTGGCTTTTCTGGAACATGCCTCTCATCTCCTGCCTGTTGTCACACAGACAGACAGACACCTGCCCAGATGGACAAGCCTCCCTGGTGGAGACTAAGGTCTGTCAGGACAGTAGCCTCACTGCCTCAGCTTGCACTTTTCATCCCACCCAAAGAGGATGACTGAAAGACTTCTGTCTGAAGCCCTTGCCAAAGACCACTGAAACCGGGACAGTGTAGCTGAGTCCAGTGGGGCAAGGCTGTAGTCTCAGCACTGGGAGGTGGAGGCACATCTGGGATACAGGTGACCCCCTCTCAAAACAACCAAAAGAGGAGTGGTAATGCTGGGGGTCAGGCTGGCTCTGTCCTGTCCCTTGTCCCCAGAGAACACAGCACTCAGTGGTCCTTCCACCTTGATCCTGTCCGCAG
Seq C2 exon
ACCCCTGCCAGAAGTCCTGGATGGCTCCTGAAGCTCTCAAATTCTCCTTCTCCACCAAATCCGACATCTGGTCTCTGGGCTGCATCATTCTAGACATGGCCACTTGCTCCTTCCTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-Gm711:NM_198628:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.7=100)
A:
NA
C2:
PF0006920=Pkinase=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAGCCTTCCAACATCGT
R:
GTTCAGGAAGGAGCAAGTGGC
Band lengths:
232-1681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: