MmuINT0071331 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:105814785-105817377:-
Coord C1 exon
chr9:105817324-105817377
Coord A exon
chr9:105814848-105817323
Coord C2 exon
chr9:105814785-105814847
Length
2476 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CATCCATCCATCTTTTTCAGGGT
3' ss Score
10.88
Exon sequences
Seq C1 exon
GGATTTTACGGATTTCGTGGGGGAAAGGGACAAAAAGGTGACCCTGGCAATCAG
Seq A exon
GTAACTTTTCACTAATTAAGTAGTCCCTGGTGACAGATCCCGCCTTGTTAGCTGCACTGGCAGTTGGGGATAAAATTGACAGCTGACTTTTCCAGCATCTTGGTTACCTTTCTTCTGGCTGTGACCAAATGCCTGGTACCACCCAGAAGCCCCCGAGCTTAAGGGAGAAACTATTTTGTCTCACCATTCAAAGGAACACAATCTGTTTTGGTGGGGAAAGCATGGTGGTTAGAGGGTCCTGGTGCGTGGTACTGACTAGGAAACAGAAGGGGGTCAACCAATGCTCAGCCCTTTCTTAGTCCTATTTTATATAGCCAAGGACCCCAGCCCATGGGGAGGTGGCATCCACAGTCAGGGTGGGTCTTCCCTTCTCAGTTTAAACCTTTTGGGATTGGCCAGCAACCCTCAGAGACAAATGGTTTGCCTCATAGGGTCCTGAATGTTTCTTAAACTCAATCAGGTTGACAAAATTAGCCATCCCAATCACATAATGAAAGCCCATTGCCAACAAACAAGATGGCGCTCTTCTGTTTGGGGCACATGGACTACTGTATTGTTCTTTTTCTGTTGCTGTGATAAAAATTCCTTGGCTAAAAGCAACGTAAGGGAGAAAGGCTTTGTTTTAGCTTATGGTTCCAGAGGGACTGGGTCCTCACAGGTGTGGGGAAGGCCTGCATGGCAGCCAGCGGGAAGCTGGCTGATCATATTCATTCATATACAGGAAAGAGAGGGGGCATGGGAAATAGACCATAAACTCTCAAAGCCAGCCTCCAGTGATGTGCTCCAGCAAGGCTCCACCTTCTATGGGTTCCAGAACCTCCCCAAACAGTGCCACTAGCTGCCACTAGTTTCTCATTCAAGTCGCCATGACTACTATGTGATCTTTGGGAATTTCCAGATAGGAAAGGTCACTGTGGGAGCTATTTCTGTAGTTATGTTTTTCAGAGGTCTGCAAGTGAACATGTTTGGCCACTATGGGCCTTTATATTCTTTCCTAACATCAAAACCAAAGAAAATGAAAGAGTTAATTTGGGTGGCTTTGGAGTTATAAATCCTAGTGAAATACTTTGTTTATTTTAAATTCATCCCAACAGCCCATTCCACCTTTATGTTCTGACCCCAGCCGACTCTGCCTTTATGTCCTGACCCATTTATGTATCAATATTTGTGAGCATCTCTAACATACCAGACACTGAGTTATTTGTCAGGGATCCAGTGATGTGGGTGGACCACATGTCATTCCTCACCCTCGAGGGTCCTATAGTACACAGAAATGGCTGGGACCACTTGGGGTCGTTCTGATCCCAGTCAGCTTGGAGGTAGGGTGTCAAGGAAGTTTTCTTGAAACCAGGAGTGAACTGTAGTTAGCAAGGCATGGATGTGGAGGAGAAACATTCTAGACCAAGGGTAAGTAAGCAGTTGAGACTGGGGCCAAACTGGCAGTTGCTCTGCCTGGAAGGAACAGAGTTCAGGTGGAGGAAGATGGGTTTCAATAAGTTGTAAGAAGAAACTCAGACAGGTCCAGTGAGCCATAAGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACGTGTATGTACATGCATGAAAGAGTTTAAACAGCAATTAAATTTCTGTTTCAGAAATACTATTTGGAAGTAGTGCAGGGACCGTTGGGGTTGCCATGGATATAAGGAAGGCTTACGGGTTGGGTCTGTAGTGATTGAGGCTGGATGGGATGTGAGCTTTGAAGTAAAGCAGTTACAAAAAGAACAGGCACACGATCTATTAGGTGCATGCAGGGACCAGCCAGGGATGAGGTAATAGGGATGTTGGTACAAGGAGCCACTCTCAGGTGATGGGCTTCAAGGAGACAGAAGAGTCGTGGGATGCCCGGGGACTCGAGGTCAAAAGGTAAGCCTCTGCTGGCGCATCCTTCTCTCTCCCCTGAGACAACTTCCTGTCTGCCCCCATTTTCTTGCTTGTTTTCTCTTTCCTCTCTCCCCTGTGATGCATTGGTTCTTTCGTTTGTAGTTGAGTCTCCAACATTCATCTAATTCCACTTGTAACGCCAATGTCCATATGTGACTGTTCAAATTTAAATTCATTGAAATAAAAAATCCCACCCTTCCGTTCCACTAGCTACAGTGCCACATAGCCAAAGATGGTAAAAGGAACATGGAGTTTCCCCCACCAGCTGAAAGTCCCATTGCACAACTCTGCACTTGACCACGAGAAGGTTTCCTGCTTTTCAGCCTGACCGTGGCCTAAACTTGAACTTGGGAAGTCTAAGGACACCTGGGAGAGGCAGGAAAACATGAATTATTTCATCTGATTGACTATCCTCTCCATGTGCATTTAATGCCATTATAAAAACCACATACAAGATAACACAGAGGCACATTTTGTTTTGTTCTGTCTCTCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCTTTTTCAG
Seq C2 exon
GGTTACCCAGGCATCAGAGGCGCTGCTGGGGAAGATGGCGAGAAGGGCTTCCCAGGGGATCCC
VastDB Features
Vast-tools module Information
Secondary ID
-Gm7455:NM_001167923:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: