MmuINT0071537 @ mm9
Intron Retention
Gene
ENSMUSG00000062464 | Gm9705
Description
predicted gene 9705 [Source:MGI Symbol;Acc:MGI:3780112]
Coordinates
chr17:32764542-32764810:+
Coord C1 exon
chr17:32764542-32764595
Coord A exon
chr17:32764596-32764682
Coord C2 exon
chr17:32764683-32764810
Length
87 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GACATTGCTGCCCTTCCCAGGGG
3' ss Score
7.94
Exon sequences
Seq C1 exon
CTTTGGTGGCCCCAAAGGACACGACTTTCCATACCTTTGTGAAGCCCTGGCTGG
Seq A exon
GTGAGTTCCTTGAAGTGAGGGTCAGAGGATATCTTAGTGTCAGAGGAAGTTTCAACTTTTGCCCACTGACATTGCTGCCCTTCCCAG
Seq C2 exon
GGGATGGGCTCTTCCTGAATTCAGGTGACAAGTGGAGCCGCCATCGCCGTCTGCTGACACCTGCCTTCCACTTTGACATCCTGAAGCCCTATGTGAAGATATTTAACCAGAGTGTGAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062464-Gm9705:NM_001100187:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.9=100)
A:
NA
C2:
PF0006717=p450=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAAGGACACGACTTTCC
R:
TGCATGATGTTCACACTCTGGT
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: