MmuINT0072417 @ mm9
Intron Retention
Gene
ENSMUSG00000030954 | Gp2
Description
glycoprotein 2 (zymogen granule membrane) [Source:MGI Symbol;Acc:MGI:1914383]
Coordinates
chr7:126590631-126592654:-
Coord C1 exon
chr7:126592492-126592654
Coord A exon
chr7:126590716-126592491
Coord C2 exon
chr7:126590631-126590715
Length
1776 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
AGAGTTTTATGTCTCTGCAGTCT
3' ss Score
5.98
Exon sequences
Seq C1 exon
ATGCCCAAACCAACGTGATTCCACCATCAATGTGCGGGAGAATGGTGTGTCCTCAGAAAGCCGATTTTCAGTGCAGATGTTCATGTTTGCTGGAAATTATGACTTAGTTTTCCTGCATTGTGAGGTTTACCTGTGTGACTCCACTACTGAACAGTGTCAACCA
Seq A exon
GTGAGTGTCTCTTTGTATTGGTGCCCAGTCGACTCTCTACATACATCTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATTACATACATCTTTTGGGTTTGCAGATAGAGGCATGGGTGGAAAGAAGGAAGGAAGGAGGGAAAGAGGGAGGGAGGGAGAGAGGGAGAGGACAGTGGGAGAGAGGGAGGAAGGAAGAATGAAGAAAATTGGCTGAATAGATGGATGATTGGATGGATGGATGGATGGATGGATGATGGATGGATGATGGATAGATGGATGGATGGATGCTTGAAGAGGTGGAAAGATGGGTGGGTAGGTGACTATAAGAGAAGCAGGTAAAGAAGAATGCTGCGCAGACTTTGAATATCCTCAAAAGCCTATTTATGAGTAATTGTTGTCTCTTTAGAAGGCAGATCAGCGTTCCTTGGCACAACAATCTATTATGAATGATTATGATATTATAGGTTAAGCATCATTGATTCAGAGATTTCAAATTAAAAAAATGTTCCAAAGTCTTAAAGTTTTTGAGGGCCAAGATGAAGCTCAAAAAGTTTCAGATTTTGGAATATTTGGGCTGCAGATTCTCATATTATAAATCAGTAACTTATAAAGACTGTAGATATTTCCAAATCTGAGAAACTCCCAAATTCTGAAGACTTCTGGACCTTAGGCTTTCAGATGAGGCATGTATGTGAGCCTGTGGCCTTTTCAGTCCCCTCTCTGCCAGACACTGCATTAAAGCTCTCACATCTTTACCTAATTGAGCTCTTCCAATGACCAAGTGAAGCCTCACTATGCAGATAAAGAAACCAGGACTCAGAGAGGCCCCTAACTCATAGCCCCACACAGAGCTAAGAAGATCAGATTTGTGATGTTTCCCATCTGAGCTGTGATTCTGGTGTCCATGCATTCACCCCTACTAGATGCTGTTTTGAATGGCAGATGTTCCTTGAGTGTTTTTGACATGTCTACATGTTGCTGCTACTATGGTTCATTTTAATATTTAAAACCAGGTATGCAGAGCTCTGTGGTAAGATATCTGCTATGCAAGCACAGGGACCGGAGTTTGAGTACCCAGAAGACATGTGAAAACGAGGATTGTGGCATGTTCTGTAACCCAAGTCCTGGGAGTGCAGAGACAGGAGGATTTGGGGGACTCACTGTATCACCAACCTAACCAAAAGGACAAGCTCTAGGATTACTGAGAGAACATGTATCAAAAAGTAAGGTGGGCAGCAATAGAGAAAGACAGCTGGTGTTAACCTTTAGCCTTTTTACATGCTTGTGTGCATAAGTGAGTAAAGGAATGTATGAATTATTGACTAAAGAAAACCAGACATGAACTGTTTGGTTATAATAGACAGATGAAGACATTTCCCCCAATTATATAAGACAGGATAGAGATGAGATTCAAACTCAGGTGTGTTAGGGCATGACTGTGAATTCTCACAGAAACCACACCATCAAAAAGAAGGTCATATGATGAGATATCCGAGGGCTTTAGGCCACAGGTGCACAGATATCCATATCCATGACATGCTGCACACAGGGGACAGGTGTTTACATTTTGATATAACAAGAGTTTTATGTCTCTGCAG
Seq C2 exon
TCTTGCTCTACAAATCGACTTCGCAGTAGTAGACCAGCCATTGACTATAATCGGGTTCTGGATTTAGGACCCATCACTAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030954-Gp2:NM_025989:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.3=100)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(1.6=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAAACCAACGTGATTCC
R:
TCTTTTAGTGATGGGTCCTAAATCCA
Band lengths:
246-2022
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: