HsaINT0070852 @ hg19
Intron Retention
Gene
ENSG00000169347 | GP2
Description
glycoprotein 2 (zymogen granule membrane) [Source:HGNC Symbol;Acc:4441]
Coordinates
chr16:20327278-20328697:-
Coord C1 exon
chr16:20328535-20328697
Coord A exon
chr16:20327363-20328534
Coord C2 exon
chr16:20327278-20327362
Length
1172 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
AAAGTTCATCATCCCTACAGTCT
3' ss Score
4.63
Exon sequences
Seq C1 exon
CTGCTCAAATCAACGTGATTCCACCATCCACGTGGAGGAGAATGGGCAGTCCTCGGAAAGCCGGTTCTCAGTTCAGATGTTCATGTTTGCTGGACATTATGACCTAGTTTTCCTGCATTGTGAGATTCATCTCTGTGATTCTCTTAATGAACAGTGCCAGCCT
Seq A exon
GTGAGTGTCTCTTTGAACTGAACTCTTCAGAGCCTGGCATGGAGCCTGGTACCTGATAGGCTTTCCATATATATTTATTGGAATTATAAACGCAGGGAGGGTGGGAGGGAGGGGAAAGGGAGGGACAGGAAGAGAAGGGAAAGGGGAAGGGGAAAGAGAACGGGAAGGGAAGGGAAGGATGGACAGAAGGGAAGGGAATGGGAAGGTGAAGGGGAAGAGGAAAGGGAAAGGGAAGATTAGGGAAGGGGACGAGGAAGGAGAAGGAGGGAGGGAAGGGAAGGGAGGGGAAAGGGAAGAGAGAGGGAGAAAGGAATACAGGAGGGATGGAGAAAGGAATACAGGAGTGATGGAGGAGGAAAGGAGGGACAGGGAAGGAGAGAAGGAAGGAAGCAGGATGAAGAGACGGAACGAGATAGGTAGGTGTATGGATGGGAGGGAGGGAAAAACGAACAATAAATAGATAGACTCTAGATCTCCTAAAGGCCCATATCTAAGCAATTTTTGTGTCCCCAGGAGGCAGATTTGATAAAGAAATCTGTCTACTAGATTCCATTGGCATCTTTTAAATGATTATAATCATAGATGACTTTTTTAGTGCTTGCACTTTGTCAAGCACTATGCTAAAACTTCTGCATACATTTTTTAATGTAAGTCTCAGAACAACCCTGTAAGTAGATTATTTTGCCTACTCCACTGTGAGGTTCAGAGAAGTCCTTGCCCACAGGGCCACACACAATTAGAAAATATCAGAGCCAGGGTGTGCCCCAGCCGAGAGGTGGCTCCAGTGCCCCTGCTCTTGCCTGCATTTGGAACTGCCTGTGAATAGTTGGCATTTTCCGAGTGCTTACTTTGTGCCCATGTGTTGCAGACACATCTCATTTTCATCTTCACAACCAGGTAGGTATTATTTAGTTATTGTAGAAAGGCAAAGTCATTGGCCCCAAATTATATAGCTAAAAGAAAGTCTCTACTTGATGAGATTCAAACCCAGATTTGTTTGGCATGACAGTGATAATTTTCTAGATTGAGATAACCACAGCATCGGAATTAGGGCCATAGCGTGAACCAGTTCTGGACACAGTTCTTGGTCCAGAGCTGCCCATTGTAGGAGCAGTCTAGATAGAATCCAGGCATTTAAATTTTGATATAATAAAAGTTCATCATCCCTACAG
Seq C2 exon
TCTTGCTCAAGAAGTCAAGTCCGCAGTGAAGTACCGGCCATCGACCTAGCCCGGGTTCTAGATTTGGGGCCCATCACTCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169347-GP2:NM_001007242:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.3=100)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(1.6=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAATCAACGTGATTCCACC
R:
CTCTCCGAGTGATGGGCCC
Band lengths:
246-1418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)