GgaINT1027468 @ galGal4
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3531979-3532508:-
Coord C1 exon
chr24:3532346-3532508
Coord A exon
chr24:3532067-3532345
Coord C2 exon
chr24:3531979-3532066
Length
279 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
GTGCTGCCATCTCCGTGCAGAAC
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTGTCAAAACTTGAAGGACAACACCATTGGCATAGAGGAGAACGGGGTGTCCCTGACCTGTCGCTTCCATGTCACTGTCTTCAAGTTCATCGGGGACTACGACGAAGTCCACCTGCACTGTGCTGTTTCACTGTGTGACTCGGAGAAGTACTCCTGCAAAATA
Seq A exon
GTAAGTGAGGCTCAGGCTGAGGGTTGCTGGGGGTTGGGGGCTTTGTGAGGTGGAGGTGGAACATGTTGTGCATGGCTCACGTGTTCAAGGGGCAGCCAGGGAGGCAGCCTTGAGGAAGAGATGGGGAGGGTTGTACCTCCCTCTGGCTGCAGGGAGGAGAGCTCTGCTGTGGGAAGATCCCAGCTGTGTCGGGGGTCTCTTGGGGGTCCGGGTTGGAGGCGTGTGGAGAGGTCTTGGTCAGTGGCCAAGAGTGATAAATGTGCTGCCATCTCCGTGCAG
Seq C2 exon
AACTGCCCCCAACACCGGCGGTCAGCCAGCGCCTTCGCCCAGGAGGCCCACGAGCAGATCCTGTCAGTGGGGCCCATTCGGAGGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000040861:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(1.6=13.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTGAAGGACAACACCATTGG
R:
GTTTCCTCCGAATGGGCCC
Band lengths:
244-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]