MmuINT0158792 @ mm9
Intron Retention
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42139392-42140653:-
Coord C1 exon
chr9:42140491-42140653
Coord A exon
chr9:42139480-42140490
Coord C2 exon
chr9:42139392-42139479
Length
1011 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TCTGGTGTTCTGTCTTTCAGAAT
3' ss Score
11.36
Exon sequences
Seq C1 exon
ATGTCAGAACATCAAAGACAACACCATTGGCATAGAGGAGAACGGAGTGTCCCTAACCTGTCGTTTCCACGTCACCGTCTTCAAGTTCATCGGAGACTACGATGAAGTTCATCTTCACTGTGCAGTGTCCCTCTGTGACTCAGAGAAATACTCTTGCAAGATT
Seq A exon
GTAAGTGTACAAAAAGCCAAGTGTTCACTCAACCTTGCTCTTGCTTGCTGCCCCGCGGTGACTGTGGACACCAGGCGTCCACAGTGGAGCCCTTCAAACGCACTCGGGGGTGGGTGGTCATATTTGGAAGAGAGAATATAGTGGAATGATGCCCAGCCAGGTAGTCAGTCTCTGACATGCCACAAGGCCATTGACTTCACGCTAGACAATGCATCCTGGGCCCACTGACATCTCAGAGTAATTGTGTAGGAGAGCTGAGCTATGCAGTGTAGGGTGCTAACAGCATTACGGGCCTCTAAACACCAGTGGTGTTTATTCTACTGTTGAAACACCTTGAAAATGTCTCCAAGAGTGTCTATACCCTGAACAGATGAGATTGACTTGGGTCAGGAGCATCACAGTAGTCTCGAGGGGTATAATGAGTCATGCATAATAAATTAAATAGCCTGTGCTCTGTTGGCTCTCAAACTCTAAATACTGTCTATCCAAGTACTCACAGTTTATCAGAACGGCACTAGGGTCTGATAGTCTGGAACTGGGTGAGGTTGCAGATGAGGGGCAAAACTGATATCTCCTCTGTGCCAGACTGACATCCTCATCATGGGTGGCTATGTCCTCAAGATTGTATTGCTCTAGAGTCTCACTCCTAGTCTTTCGCAGTTCATCTTTATGCTTCCATCATGTTTACAGGAGCAAGATGTGAATTATGGTCAGAGCTACTTACAGATGGTGCTGCATACATTAGTATCAGACGAGATCCAACAATGTTCATTCCTGAGCGTAGAGCCTCTTTGAATCTCATTCTAGTGTGGAGAGTATATTTAATTCTGCTTGACATAAAGCCTAGAGTCCCAGTGGGCCCGATGATCAAGAATGCATTGGTTCTAATTAATCTGAGCAGCAATAGCGCTGGAGGCCGAAGCCGCTGTCTCTCTTGGAGGTGGAAACATGGTGGAGAATAAGTTATCAGCTTAATTGTGTGAAATCTCCCTCTGGTGTTCTGTCTTTCAG
Seq C2 exon
AATTGCCCACAAAATTCCAGGATCGCCACAGATTATTCAAAAGAGCACAAAGAACAGATCATTTCAGTGGGACCCATTAGGAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705-Tecta:NM_009347:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(1.6=13.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGAACATCAAAGACAACACCA
R:
TCTCCTAATGGGTCCCACTGA
Band lengths:
246-1257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: