BtaINT0146757 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32340830-32342732:+
Coord C1 exon
chr15:32340830-32340992
Coord A exon
chr15:32340993-32342644
Coord C2 exon
chr15:32342645-32342732
Length
1652 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
TTTGGTGTTCTGTCTTTCAGACT
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTGTCAGAACATTAAAGACAACACCATTGGCATTGAGGAGAACGGCGTCTCCCTCACCTGCCGCTTCCACGTCACGGTCTTTAAGTTCATTGGGGATTATGATGAAGTCCACCTGCACTGTGCAGTGTCCCTCTGCGATTCAGAAAAGTACTCCTGCAAAATA
Seq A exon
GTAAGTGAGAGTGTGGAAATTCAATGCGCGTCTTTGTTTCTCACGGCCTCAGGTTTCCCCACGTGGGGATGGTGAATGCCAAGTTCGGTGGCTCTTTAGAGGTTTTTTTTAGGGCTCAAGGCACCTGGCGGTGGCTGAATAACAACCATCATCAGATGCCCAGGAGTGATAGTCATCTGTGCCAGAACAATAAGAGAGCAGGGCAGAATGATGACCGTTTACTCTTCTCTGTCTCTGAAATGCCAGACTGTTGTTGGTGTAACACTAGACCAGGGTTTCTTAAACCTCAGGGCTACTGACATTTGGACCAAATGATTCTTTGCTGTGGGGCTGCCCTATGCTCTGTTGACTGTTCAGCACATCTCTGACCTCCACCCACTGGATGCCAGCACCTCCTCCCCTCTTACAACACCCGAAATGCCTCCTGGAATTGCCCAGTGTCCCCTGGGGGAAAAAATTGGCCCTGTTTGAGAACTACTGTGCCAGAGTACTACTTCTTGAGTACTACTCAAGAAGCCAGGTCACCTGCCTCTGAAGTGAAGGCTGGGGCCAAGATCTCCTCCACTTAGAAGCAAACTGCCAAGTTCAGTATGTACTTTATCCAGGTCTCCTTTAGGCAGGGGCTATCCCACAGATTATCCACATCCACGCTCTGGGCCTGGGGCTCTGAGGGGCTGACAGATGAGATGACAGACTCATCATCTGGTCCACGCCAGGCTTACATCTCCACCATGTACAGCTATGCCCCTAAGGTTTTACTGCGCCGGTCCCTGGCCCCTAACCCTTAACATTGCAGCTTTACCCTCACCTCATGTTGACAGATCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCTTGGAAAATCCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATGGGATTGCGAAGAGTCGGAGACAACTGAGCGACTTCACTTTCACTTTTTACTTTCATGCATTGGAGAAGGAAATGGCCACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGCCGCACAGAGTCGGACACGACTGAAGCGACTCAGCAGCAGCAGCAGCAGCATGTTGACAGATGGCCTCCCAGGTGGCTCAGTGGTAAAAGACCTGCCTGCCAATGCAGGAGACCAGGGTTTGATCCATGGGTTGGGAAGATCCCCTGGAGGAGGAAATGGCAAGATATTCACTCCAGTGTTCTTGCTTGAAAAATCCCATGGACAGAGGAGCCTGAAAGTCTACAGGGCTGCAAAAAAGAGTCAGATGTGACTGAGCGGCTGAACAATACATTTTTGGCAGAATTGAGATGGGGCAGTGGCCCGAGCTGCTTACCGATGCTGGTCCATACATTACCATCTGATCTGATACAGGATCCTCCTTCCTAGGAAGGGAGCCTCTTTGAATCTAATTCTAGTGTGGAGAATATATTAAATTCTGTTCAACATAAAGCCCCAAGTCCCAGGGGGCTCAATGATCAAGAATACATTGCTTCTAATTAATCTGAGCTGCAATAGTGCTCCGGGCTGAACCCCTGCCTCTTTTGGAGGTGAGGATGTGGTGAAGAATAAGTTATCAGCTTAATTGTGTGAAATGTTCCCTTTGGTGTTCTGTCTTTCAG
Seq C2 exon
ACTTGCCCTCAAAATTCCAGGACTGCCACAGATTATACCAAGGAACCTAAAGAACAGATCATTTCAGTGGGACCTATTAGAAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456:ENSBTAT00000047085:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(1.6=13.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAGAACATTAAAGACAACACCA
R:
TCTTCTAATAGGTCCCACTGAAATGA
Band lengths:
247-1899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development