HsaINT0165592 @ hg19
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:11720]
Coordinates
chr11:121058541-121059876:+
Coord C1 exon
chr11:121058541-121058703
Coord A exon
chr11:121058704-121059788
Coord C2 exon
chr11:121059789-121059876
Length
1085 bp
Sequences
Splice sites
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
3' ss Seq
CCTGGTATTCTGTCTTGCAGACT
3' ss Score
9.58
Exon sequences
Seq C1 exon
GTGTCAGAACCTCAAAGATAACACCATTGGCATCGAGGAGAATGCAGTCTCCCTGACCTGTCGCTTTCACGTCACCGTCTTTAAATTCATAGGGGATTACGACGAAGTTCACCTTCACTGTGCAGTGTCACTCTGCGACTCAGAAAAGTACTCCTGTAAAATC
Seq A exon
GTAAGTGAGAGTGTGAAAACAAAGTGCTTAGCCTTATTTCTCACTGTCTTGGTTTCCCAACATGAGGATCGTGAATGCCAGGTGACCGGACTGGAATCATCCATAGATGCTTGGGGTGGACAGTCATCTTTGATGGGACAGTGAGAGAAAACGCAGGGAAATATATCTATTTACTCTTCTATCTCTGAATTGTCAACCAGTCATTGGCTTAACGCTAGACTAGGGTTTCTCAAAGCTCGGCACTGTTGACGTTTTGGACTGAATAATTCTTTGTTGTGGAGGACTGTTCTGTGCACTGTAGGATGTTAGCAACATCCCTCACCTCTACCCATGGATACCAGTCACATCTTCCCCCAGTTTCAACACCCAAAATGTCTCCAGATGTTGCCAGTTGGCCTGGTTGAGAACCACTGCACTAGAGTCTCAAGGAGCCAGGCGGCCTGACTCTAATGACCACTGGGCCAAGTTCCACTCCACTATAGAACCAAACTCTTGAGCTCAGGATACAATGTATCCAGGTGTCCTGCATCACACCTGATCTACATCAGACTCTGGAGGGGGTGAGGGATGAGGTAGCAAACCAATGATCTCTTCTGTGCCAGGCTTCCACCTCCACCACTTACGGGCTGGGTCCTTAAGATTTGATTGCACCAATACCTGGCCCCTAGCCTTTAACATTGCAGCTTTATGCTTACACCATATTTGCAGAATCAAGATGTGAATTATGGTCAGAGCAACTTACAGATGATACTGCATACATTAGTGTCTGATGAGACACAGCAATCCTATTCCTGGGCAGGGAGCCTCTTTGAATCTAATTCCAGTGTGGATCAATCAGAAATGAAGGAGAGGTTTTTAAAAAGGAAAATTACTAATTCCAGTGTGGAGAGTGTATTTAATTCTGTTCAACATACAGCCTAGAGTCCCAGTGGATTCAATGATCAAGAATGCATTGGTTCTAATTAATCTGAGCCTCCATAATGCTTGAGGCCAGAGCCACTGCCTCTTTTAGAGGTGAAACATGGTGAAGAATAAGTTATCAGCTTAATTGTGTGAAAATTTCCCCCTGGTATTCTGTCTTGCAG
Seq C2 exon
ACTTGCCCACACAATTCCAGGATTGCCACAGATTACACAAAAGAGCCCAAAGAACAGATCATTTCAGTGGGACCTATTAGGAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-TECTA:NM_005422:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(1.6=13.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGAACCTCAAAGATAACACCA
R:
TCTCCTAATAGGTCCCACTGAA
Band lengths:
246-1331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)