MmuINT0073449 @ mm9
Intron Retention
Gene
ENSMUSG00000027883 | Gpsm2
Description
G-protein signalling modulator 2 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1923373]
Coordinates
chr3:108484924-108485743:-
Coord C1 exon
chr3:108485590-108485743
Coord A exon
chr3:108485142-108485589
Coord C2 exon
chr3:108484924-108485141
Length
448 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTATTCTTTCCTGTCCGTAGCAC
3' ss Score
10.04
Exon sequences
Seq C1 exon
AAAATCAGTTCAGACACGATTGGAGATGAAGGATTCTTTGACTTGCTAAGGCGATTTCAGAGCAACAGGATGGATGACCAGAGGTGCCACTTACAAGGAAACTGTCGCACAACATCCACAGCAGCTGCTTCTGCTACCCCCAAGTTGATGAAAG
Seq A exon
GTAAGCCTTCTTTGCTCTCCTTCAGTTTCGGTTCATCTTATGTATCTGAGGCATAGCCCAGGCTAGCCCATTAGGTAGCAAGCAGTAGGCCCTTCATCTGCAACACACACAAAGTCAGATCATGAGACATTTCATATCTGAAATTTAAAAATCTAAACTATATTACTTATATTGTTACATTTCTCTACTATAAGATGATTTCTCCCATAGATTAAGATCGGCCAGTCTTTTGACTTCACTAAATGATTCCCATCCTGAACATGGAAGGAACAAAGGAACTTATAAAGGAAAAGACAACTGTTTAGTCGCGTTCCTCCCCACTCTGCTGGGGAAGGCCACACAGCAGCAGTGCCCTGCAGGAGAGGAAAGCTAGGTGCATGCGAGTTATGTGCAGATAGAAATCTCAACACGTTTGTAACATTTCGGTGTTATTCTTTCCTGTCCGTAG
Seq C2 exon
CACCGTCTGTCTCTGTGGTGTCCCCCAACACAGATGAGTTCTTAGATCTTCTTGCTAGCTCACAGAGCCGCCGTCTGGATGACCAGAGGGCCAGTTTCAGTAATTTGCCAGGGCTCCGCCTGACAAAAGGCAACAGTCCATCTGTACTTGAGCGCCTGATGACAAATGACAAGAAAGAGCCTGATGAAGACTTCTTCGACATCCTTGTAAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027883-Gpsm2:NM_029522:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.425
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=44.2)
A:
NA
C2:
PF0218812=GoLoco=WD(100=31.5),PF0218812=GoLoco=PU(47.8=15.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCTTTGACTTGCTAAGGCG
R:
CTGGCACTTTACAAGGATGTCGA
Band lengths:
342-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: