RnoINT0067132 @ rn6
Intron Retention
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211482118-211483263:-
Coord C1 exon
chr2:211483113-211483263
Coord A exon
chr2:211482336-211483112
Coord C2 exon
chr2:211482118-211482335
Length
777 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GCTACTCTTTCCTGTCCTAGCAC
3' ss Score
6.2
Exon sequences
Seq C1 exon
AAAGTCGGCTCGGACGCGGTCGGAGATGAGGGATTCTTTGACTTACTGAGGCGACTTCAGAGCAGCAGGATGGAGGACCAGAGGTGCCACTTACAGGAGAACCGGACAGCGTCCGTGGCCGCTTCCTCTGCTACCCCCAAGATGGTGAAAG
Seq A exon
GTAAGCAGCCGTCCCTGCTCTCCTTCAACGTTGGTTCACCTCAGTATCTGAGGCATAGCCCAGTCTAGCTCATTAGGTAGCCAAAGCTGGCGTAGACCTCCTGATCCTCTTGCTTCCCCTCCCAGGTGCAGGGATAACAGACACCGCTGTGAGATTTCCCCAATTCTAATATTCTCTCTAGTGCTGTAGTGTCTTATAGTTCCCGTTATAGGAAATGCAGTGAAAGGCCCCATAAACCTAGCATGGCACAGAGACAGGGGTACTAAAGTGAATTCGAGACCAGCCTGGCCTGTCCGTGAAACCCTGACTGAAGGAGAGGCTGCTGCCAACTGGTAGAACTTTTGTCTAGCAAGCAGCAGGCCCTCATCCGCAGCCCCACACCCAAAGACATGGTCGCTGTCTGTATCCTATAATCAAATCATAAGACATTTCATATCTGAGACTTAAAGTCTAGAGCATCTTACTGTATTGTTACATCTCTACCGTAAGACGATTTCTACCACAGATTAAGGGCAGTCTTTTTACTTCACTAAGTGATTCCCATCCAGCATGGAAGGAAAAACAACCGTTTACTCACGTTCTGAAATCCAGCCCGATACCTCAGAGAGTACTAGACAAAGGCAAAGAGGTCTAAATAAATCTGAAGCACTCTGCTGGGGAGACCACAAAGCAGCAGTCCCCTGCAGGAGAGGGAAGCAAGGTGCAAATAGGTTATGTGCAAACAGGCGTCCTTTCGGCATCTTAGTAACACTTAGGCGCTACTCTTTCCTGTCCTAG
Seq C2 exon
CACCGTCGGCTTCTGTGGTATCCCCCAACACCGATGAGTTTTTAGATCTCCTTGCTAGCTCGCAGAGCCGCCGTCTGGATGACCAGAGGGCCAGCTTCAGTAATTTGCCAGGGCTCCGTCTGACAGAAGGCAACAATCAGTCCGTACTTGAGCGCCTGATGACAAATGACAAGAAAGAGCCTGATGAGGACTTCTTTGACATCCTTGTAAAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149:ENSRNOT00000066178:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=NA C2=0.507
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=45.1)
A:
NA
C2:
PF0218812=GoLoco=WD(100=31.5),PF0218812=GoLoco=PU(47.8=15.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCGGAGATGAGGGATTCT
R:
ACAAGGATGTCAAAGAAGTCCTCA
Band lengths:
343-1120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]