MmuINT0073456 @ mm10
Intron Retention
Gene
ENSMUSG00000027883 | Gpsm2
Description
G-protein signalling modulator 2 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1923373]
Coordinates
chr3:108698918-108700779:-
Coord C1 exon
chr3:108700664-108700779
Coord A exon
chr3:108699074-108700663
Coord C2 exon
chr3:108698918-108699073
Length
1590 bp
Sequences
Splice sites
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
3' ss Seq
GTTATGTGAATTGGTTTCAGGAA
3' ss Score
5.62
Exon sequences
Seq C1 exon
CGTCTCCTAATTGCAAAGGAGTTCGGAGATAAGGCGGCTGAGAGAAGAGCGTACAGCAACCTAGGAAATGCATACATATTCCTGGGTGAATTCGAAACTGCTTCCGAATACTACAA
Seq A exon
GTTAGTCAGATATTTTTTGTGGATGAATGTCAAATGAATAACTATGCATCCCATAAAATCACATTGGCTTTGGAGCCGAAACCTGGTTTTGATGATGTGTGTCAGCATCAGGGCCAAGACCTTCACACCTGTCTCACCTGTGGCAGGCATCAGGTCCTGGATCTGGGGTTGTTGTGAGAACTGGGTAGGAGGATGTGTTAAGAACTCAGCAACTTGTGCTAAGTACTTACCTGGTACACACAGTGCTCAAGAAACACTGTGCCCCCGTTTTATTGTTTTCTGAGAGTCTCACCTGGCGGCCTTGAATTGGCAATCCTGTCTCTATCTCCTTAGTGTTGTCATTGCAGACACACACCATCACATGTAGGCTTTCACCTGATACTTAGTGGCAGCTGTGTGACTTCTGTTATGTTTATTTTTGTCTTTAAAACTTTTTGTTTAAAGTTGTGAACTTCTCAAGTCTTTTATAAGCCCGTTGTAGCATGTATGGTGTGTATGCTTTATCTCACTCGGTTATGAGTTGTGGCCAACTTGTCTGAAGATAAAAGTTTTCAGAAAGCATAGGTCTTAGTGTCCACTGATGATCACCGAGTTTTTCCCTACTCCCCCAGACTCTTAGCCAGCGTTTACCCTTCTGCCTGCATTGACTGTCACCAAAGAGAAGGGGCGCTGTTCATTGCCAGCCAGGCTTCTGTGTCAGGGTCCCTCTGGACCAGCAGCAGGATAGCCAGGTTTAACCTGCTTCCAATTGTTGCCCTGTGCCTTCTGGACTATTCAGGGTTTTCTCTGCTTAGTGGGGTTTGAACACTCATCCAGACTGAACCTAAAGCACAGGGGGTGATTTGTGTTGAAGCTTTAGAGATTCCCAGGTGACAGAATTCACACAACAACAACAAAAACAGTCCTAGCTTTTTGGTGTATGCCTTTCCCAGACCAGTAATCTAGTCCCATTTCTAGAAGTGCCTATCTTTAGTAAACTTTCTCTCTTTTTTTGTTATTTAAAAAAGAAAAATCTGGCACACACCCTTAAGCAGTATGGGCAGGTGCATCACTCTGAACTTGATGCCAGCCTCATCTACAAAGTGACTTTCAGACCAGTTTGAGGTACACAGTGAGACCTGTCTCACATAAAGAGAAAAGAAAAGGCTAAAGTTGTTTTAGACCATCTAAAACATTAAAGGATGCCGTCTGTCTTTAAATATCTGCCCATGGTTAATATTTGTTGGTTGATTATTGATTAGCTGAGTGATTCTCTGCCTTCCCAGTGCTGCGATCCTTTAATACAGTTCCTCACGTTGTGGTGACCCCCAACCAGAAAATGATTTTGTTGCTACTTTATAACTAACTAGTTTTGCTAGTTATGAATCATAAAGTAAATATCTGATATGCAGGATATCTGGTAGCCGCTCCCTGTGTTGTTGTTGTTGTTTTACTTTAAAACATCTTTTCACTTTCTCTAAAGTAATAGAAAATATATTGGACCTTAATACAGACTTATATAAAAGGCAGCAAAAAGCAACAGAGGTAGAAAATGTTAATATGATTCTTAGGACCAGAATTTAAAATGAGCGTTATGTGAATTGGTTTCAG
Seq C2 exon
GAAGACACTGCTGCTGGCTCGGCAGCTTAAAGACAGAGCCGTGGAAGCTCAGTCTTGCTACAGTCTTGGGAATACATACACTTTGCTTCAGGACTACGAGAAGGCCATCGATTACCACCTAAAGCACTTAGCAATCGCCCAAGAGCTCAAGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027883:ENSMUST00000029482:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(10.0=15.4),PF134241=TPR_12=PU(37.2=74.4)
A:
NA
C2:
PF134241=TPR_12=PD(61.5=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAATTGCAAAGGAGTTCGGA
R:
ATCCTTGAGCTCTTGGGCGAT
Band lengths:
266-1856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types