MmuINT0075111 @ mm9
Intron Retention
Gene
ENSMUSG00000022487 | Gtsf1
Description
gametocyte specific factor 1 [Source:MGI Symbol;Acc:MGI:1921424]
Coordinates
chr15:103251621-103255962:-
Coord C1 exon
chr15:103255862-103255962
Coord A exon
chr15:103251748-103255861
Coord C2 exon
chr15:103251621-103251747
Length
4114 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCTTAATTTTGATTCCACAGAAT
3' ss Score
8.71
Exon sequences
Seq C1 exon
TCGACTCCCTGGACCCTGAAAAGTTATTACAGTGCCCCTATGATAAAAATCACCAGATCAGGGCCTGCAGGTTTCCTTATCATCTTATCAAGTGCAGAAAG
Seq A exon
GTAGGGTATTATTTTTATAATATGCACTTTAATGCCTCTTGCGTTCTTCTGAAGAGCCAAGCTTTATGAGCAACAAATAATTTAACATAAATATTTTAATTGAATGCCAGATTGTTTGGCAAATCTACCTTTGTTAAATTTCGATATTTACAAGTTTTTGTTTTATTCTTTGAAGTATATAAAATTTTAATCTTTTATCTTCTTCCTCCTAACTAGCAACAAAGCATTGTTTAAAAACAGTGTCTCTAGAGTATCTAGGCATGTACAATCACACATGGGTTTGGTGGTACTAGAGATTGAACCTATTATTTTAAGACATTAAATATGAATTATATATAGTTTGGATTAAATACTAAACTTTTGGTATCTGTATCTAACATTGCTATTCTTTTTTTTTTTTAAATTAGGCACAAATGTATTTAGCTTGACTTTTGGAAAAACAAAGGAATCACTAATTTTTTCTTAGTAACAAGAAACTTTCCCTTATTAAGTTTGATGTGTTCATTATTTCTTTTAAAAATAGTTTTAGATTTATTTTTATGTGTATGGGCATTTTAGTTTAATTAAGTATATGTACACCATGTGTGTGCCTAGTGCCTGTGGAAGTCTGAAGAACGTATTGGATCTTCTGGAAGAGTTAAAGGATAGTTACTAACCATCATGTGGGTGCATGAAACAAATCTGGGTCCTCTGAAAATGTAACAAGTTCTAACCACTGGGACATCTCTCCAGTCCCTCTATTACATCTCTTTGTGATTTTTTTGTTTAAAATTGTTAGGCCTTGTTCACATCAATGGGAGGAGAGGCCCTTGGTCCTAAGAAGGTTCAATGACCCAGTGTTAGGGGAATGCCAGGACCAGGAAGCAGGAGTGGGTGGTTGGTGAGCAGGGGGAGGGGGATGGGATAGGGGTTTTCAGAGGGGAAACCAGGAAAGGGGATAACATTTGAAATGTAATAAAAGAAAATATCTAATTAAAAAAAAAAGAAAAAAATTGTTAGCCCAAGAAAATATTGTTTCTAAAAATAACTCCCCAAATTTCAACATCTTCTTTTACCTTTTTTTAACTTTATTCTTTGTTTCACATCATGTATCCATGTCCCACTCATCCTCCTATCCCCTTGCATCTGCACCTCGCCCTTACAACCCCCCCCCCAAAAATAAAAACCATGGTAGCTGTAGTGTGTCACAGTATACCCCTCTGTCCATCTCTTTACTAACGAATGTTTATTGCAACAGCTTTATTTTTAAGATTTTTTTTTTAATGTGTAAGTTTGTGTGCACATTGTGCACACAGGTGCCCATAGAGGCCAGAAGAGGTCGTTAGATCTCTTGGAACTGGAGTTAACAGTAGGCAGTTAGTTCTGAGTCACCTTTAGACAGTTAGGTCCTCTGCAAGAGCAGTCAGCACTGTTAGCCACTGAGCTATCTCTACAGTCCCGAAACTTTTTTTTTATTTATTTATTAGCATTCCTCTCTGGTTACTTCTTTATAGACTTAGCTAATTTAACCTATTCAGGTCCTTTGTTAATTAAAAAGTACTTGTATAGAGTTGTTAGAATATTGATGTCAGGGCTATAAAAATGGCTCAGTGGTTAAGAGTGCTTGCTGCTCTTCCAGAGGTCACAAATTCAGTTCCAGCTACCCATGTCAGTCAATTCACAACTGCCTATAACTCCAAACATACAAAATCCAGTGCCCTCTTCTGGCCTTCCACAGGCACCTGTACTCATGTGTAGATACACAAAGACAATACACACAAATGTAAGATCATTTTTTAAACATTGTTTTAAGATTTATATTTTATGCATATAAGTGTTTTGCTTCATATACGTCATGTGTGTACCTGGTGCCTGAGGAAGCTTTATAACTGAAGGAAACTGTAACTGAGGAAACATATGGAACTGAAGTTACATATGATTATAATCTGCCACGTGGGTGCTGGGACTGAATGAATCCAGGTCCTGTGCAAGAGCAGCAGTGCTCTTAAACTTGGAGCCATCTAAGTAGAGCTTCTTGTAGCCATGGTTGGCCTTACCTCAGTAGTAAAGGAGGACCTTTACCTGCAGATCTCCCTAGAGCTGGGATTCCCAAGAGCTGGGATTGAAGGTCTGTGCCTCTATCCCTAGCTCCAGTAAATATGGTGTATATAGTGTGTGTACACTTGTGTGCACAAGAGGAAGCTACACTCTACCGTATTTCTTTGAGACTGGATTTTTCCCTGAACCTGGGGCTTATGTTTTTTGCAACTGGGCTGACAGCCAGCAAGCTATCTCCTATCTTTGCTGCCTACCAGTGCTGGCATTACAGGCGTGCAAGACCATACCCAGCTTATTTACTGGGTGCAGAGTTCAAACTAAGGTCCTCACAATTGTTCAACAAGCAACCTTAACCACTGAACCATCCCTCCAGATCCATGCAAGTTCCTTAGTTCTGTGTTTTTCCAACCTACTTCTCACTAGTTTTACATTTTGAGTTTCGATTGTGAAACATCTTTAAAACCTTTTTTATTGAAAAAAGTTTTTTTCATACAAAATATTTTGATCATGTTTCCGTCCCCCAATTCCTCTCAGGTCCTCCCTAACTTCCTACTACCCAACTTTATGTTCTTTCTCTCTTTAAAACAATAGCAACACATTTTAACGTTTGTGTATTTGCAAGCATTTGTGGACCACATTGTGCTTGTGAAAGAGAGTCAGCCCTCTCCTACTATGTAGGTCCTTGATATCAGGGATATCAAATTCAGGTTGTCAGACTTGGTGACCAGTGCTGAGCGCCTCCTTGCCACTCTTTTTAATTTGTGTGTGTATGAATACCCACAGAGACAAGAAGACTGTCAGATTACCTGGAGCTGGGCAGTTGTCAGGCCTCCAGTCTGACTGCTACTCTTTGAGAGTAGCAGCACTCTTAACTCCTGAGCCATCTCTCCAAGCCCACCTTTCTTAAATCTCTTTATTGCTGGTACATTTGCCATGACATTTTGGTGATAATACTTAGTTTGGGTTTAAAACAAGATATTAACTAAATAACTAAATAAATGAATGGATGGATGAATGGGGCTGGAGAAATGACTCCACTGTTAAGAGCACTGGTTGCTCTTCCAGAGGTCCTAAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTATAATGGATCTGATGCTGATATCCTCTTCTAGCATGCAAGTCTGCATGCAGATAGAACGTCCATACAATAAATAAATAATTTTTTTTAAAGATACTGGCACACAAAGTGTATATCATTTGGACTTTTCCTAAGTGAAATAGCTGAAATTGTTTACCAGGCAGTGGTAATGGCATACCTTTGATCCCAGCACTTCAGAGACAGAGGCACATGGATCTCCAAGCTCAAGGCTAGTCTGATCTACAGAGCAGAGTTCTAGAATAGCACAAAACTACACAGAGAAACCCTGTCTCAAAAATCAAAACAAAAAACCCCAAACCAAAAAACAACAAAAAAGGTTATTGTTCGGTTCCTCACTCCAGAAATCATTACTTTAAATGTCTGTGTTGGCCTGAAAAAGCATTAGCTTGTCTCTGCAGCTCCCTTACAACAGCTATTTCCCAGCATTGTTAAATTACAATAGCAGGGCACCACTGCAGTGTGGTCTGCCTCATTGTTACTGTTGATCCTGAATGTTAGCTTTCAAAGACACCCAGAGAACTCCAGCACTGCAGGCTGTGCTGTCTGGAAAAGAGTGAAGAGATGGTTAATATTCTTTATAAGCCACTAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGATAATGAATCCCTGCAGTCATAACCAAAAGGTTTGCATTTTGACAATATTGAGATAGGAGCTGTATGGTCTGTATGAATGATAACTCCCTCTCAATTTTCAGTGATAAGTGCGCCTACCATTGCCACCACACCTGAGATATAAACTTGTTAAGGGGTTTCAGGGAGCCATTTATAGAAAAAAAAAAAAGCTGAGCTAGTTTCCTTGAATTTTAAGAAATACAAAGAATTGATAGATCTCTTAATTTTGATTCCACAG
Seq C2 exon
AATCATCCTGATGTCGCAAACAAATTGGCTACTTGTCCCTTCAATGCTCGGCATCAGGTTCCCCGGGCTGAGATCAGTCATCACATCTCGAGCTGTGATGACAAGAGCTGTATTGAGCAGGATGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022487-Gtsf1:NM_028797:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF052537=zf-U11-48K=WD(100=79.4)
A:
NA
C2:
PF052537=zf-U11-48K=PD(0.1=0.0),PF052537=zf-U11-48K=WD(100=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: