RnoINT0068574 @ rn6
Intron Retention
Gene
ENSRNOG00000036831 | Gtsf1
Description
gametocyte specific factor 1 [Source:RGD Symbol;Acc:1310791]
Coordinates
chr7:145038456-145044401:-
Coord C1 exon
chr7:145044301-145044401
Coord A exon
chr7:145038583-145044300
Coord C2 exon
chr7:145038456-145038582
Length
5718 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCTTAATTTTGATTCCACAGAAT
3' ss Score
8.71
Exon sequences
Seq C1 exon
TCGACTCCCTGGACCCTGAAAAGTTACTACAGTGCCCCTATGATAAAAACCACCAGATCAGGGCCTGCAGGTTTCCTTATCATCTTATCAAGTGCAGAAAG
Seq A exon
GTAGGGTATTATTTTTATAATGTGCCCTTTTAATTCCTCTTGAGTTCTTTGAAGAGCCAAGCTTTGTAAGCAACAAATCATTTAACAAATATTTTAATTTAATGCCAGATTGTTTGGCAAGTCTCCCTCTGTTAAGTTTCAGTATTTACAGATGTGTTTTATTCTTTGAAGTATATAAAATTTCAGTCTTTTATTTTCTTCCTCCTAGTGACCAGTAAAGCATTGTTTGAAGACAGTGTCTCTAGAGTATCTAGAGAGTACAATCACACATGGTTTTTGTGGTACTAGGGATAGAACCTATTGTTTTAAGATATTAAATGTGAATTATATATAGTTTGGGTTAAATACTAAATTTTTGGTATCTATATCTGACATTGGTATTAAAAAATTAGACACAAATTTATTTAGCCTGGTTTTCAGAAAAACAAATCAAATTTTTCCTAGTAATGAGAAACTCCCCCTATTAAGTTTGATGTGTTCATTATTTTAAAAATAGTTTTAGATTTATTGTATGTGTTTGGGCATTTTAATTAAGTATATGTGTGCTATGTGTGAGCCTAGTGCCTGTGGAGGTCTGAAGAGAGGGTATTGGATCTTCTGGAAGAGTTAAAGGATAGTTACTCACCATGTGGGTGCTGGGCAACAAATCTGGGTCCTCTGAGGATGCAGCACATGTGGCACTAGGCCATCTCTCCAGTCCTCCTATTACATTTCTTCTGATTTTTTGTTTAAAATTGTTAGCCCAAGAAAATATTGTTCTAAAAATAACTCCCCAAATTTCAACACCTTTTTTACCTTTTTTTAACTTTATTCTTTGTTTCACATCATATATCCCTGTCCTACTCATCTTCCCCTTGCATCTGTCCCTCGCCCTTACATCCTACCCCCACCAAATAAAAAACACACAAGTAACAAATCATTCAAAACATTTCCTCATGGGAGCTGTAGTGTGTCACAGTGTGTCCCACAGTGAAGAACTCTGTCCACGTGTGCATGTCTGTAACGCCAGAAGAGGGCGTTAAATCTCTTGGAACTGGAGTTAATAGGCAGTTCTGAGCCAAGTAGGCAGTTAGGTCCTCTGCAAGAGCAGTAAACACTGAGCTATCTCTATAGCCCCAAATATAAATAAATAAATAAATATATATATATATATATATATATATATATATATATATATATATATATATATAGCATTTCTCTCTGGTCACTTCCTTATAGACTTAGCTAATGTAACCTACTCAGGTCCTTTGTTAAATAAAAAGCACTTGCATAGGGTTGTTCAATTACTGATGTCAGGGTCATAGAGATGGCTCAGTGGTTACTGCTACTCTTCCAGAGGTCACAGATTCAGTTTCAGCAACCCATGTCGGTCAACTGAAAACTGCCTATAACTCCAAATATACAAATCCAGTGCCCTCCTCTGGCCTTCCACAGGCACCTGTACTCATGTGTAGATACACAAAAACAATACACAGCAATTAAAGTGTAAGATTTTTTAAAACAAGATTTTTTAATATTTGGATTTTATGTATGTGTGTTTTGCCTGCATATACATCAGATGCGTACCTGGTGCCTGAGGAAACTTTGTAACTGAAGGAAACTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTTAAGTAGGTCAGGAAGCAGGAGCTGATGTAGACCATGGAGGGATGTTACTTACTGGCTTACTTCCCCTGGCTTGCTCAGCTTGCTGTCTTATAGAACCCAGGACCTCCAGCCCAGGGATGCCACAACCCACAATGTGCTGGGTCCACCCCTCTTGATCTCTAATGGAGAAAATGCTTACAGCTGGGTCTCATGGAGGCATTTTCTCATTTGAAGCTCCTTTCTCTGTGATAATTCCAGCTTGTGTCAACTTGACACACAAACACATCGCTATTAAGCTTCAACCCTTACTTTCTTATTTATCCCCAAGATCTAAATAACTTTTAAGAGTCCCACAGCCTTTACAAATTCTTACATAGTAAAATTTCAATCCCTTTAAAATATCCAATCTCTTTTAAAATTCAAAGTCTTTTTACAGTTCAACATCTCTTAACTGTGGGCTCCACTAAAATACTTTCTTCCTTCAAGAGGGAAAAATAACAGGGCACAGTCACAATCAAAAGCAAAATCAAACTTCAACTGTCCAACATCTGGGATCCACTCACGATCTTCTAGGCTCCTCCAACGGCTTGGGTCACTTCTCCAGCTCTGCCCTTTGTAGCACACACGTTGTCTTCTAGGCTCCAGCTGCTGTACTCCACTGCTGCTGCTGTTCTTGGTACTCATCTCATGGTACTGGCATCTCCAAAACACTGCTGTCATCTGCTACAACTAGGCTTCATCAATAGCCTCTCACAGGCTCTCTTCATGGTGCCAAACCTCAACTCCTTTGCATGACCCCTTTAGTCCTGGGCCATCAATTGCAACTGAGGGTGCACCTTCACCAATAGCCTTCCATGGCCTCTCACAGTGCCCAGCCTCAGCTGCTCTTCATGCCTCCTTCATGCCTTCAAAACCAGTACCACCTGGGTGACTCTTACACACTACCAAGTCCAGCCACCACACAAGATACAACCTTGGCTATCTCTGGAACACAGCCTCTTTGTGCTCTCAGAAAACACTTCCCAGAAGATTTCACCTCAGTGATGCTGGTCTCTTCTTAACACCAATTTCTTAGCTCCAGCTGACCAGCATCAATAGTCTCAGTAATACAAAGGTTTTGATTTGCAGTTCTGGTATCTTGTCAATCACAGCTGATTCTTCAGCCCCAGCTAACCAAAACCACAAAATCTTCACCATCAAAACAGCAACAGCCCTGATAAGAGTCTTTAATCTTTCCTCTGAAATTTCACAAGCCAGGCCTCCATCTTCTGCACTGTTCTCAACATTATCTTCCAAGCTCCTACAGAACACCCCACAGAGCTCTTAACATCCCAATGACTCTTCTAGCTCAAAGTTCCAAAATCCTTCCACAGTCCTCCCCAAAACATGGTCAGTTTGTAACAGGATCTACTCCTAGTACCAATTTGTCTTAGGGTTTCTATTCCTGCACAAACACCATGACCAAGAAGCAGGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAGCAAGTCAGGACTGGAACTCACACAGGTCAGGAAGCAGGAGTTGATACAGAGACCTTGGAGGGATGTTACTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGCTGTCTTATAGAACCCAAGACCACCAGCCCAGGGATGCCACCACCCACAATGGGCTGGGCCCTCCCCCTTGATCACTGTTGAGAAAATGCTTACAGCTGGGTCTCATGGAGGCATTTCTTCAACTGAGGCTCCTTTTCTCTGTGATAACTTCAGCTTGTGTCAAGTTGACACACAAAACTAGCCAGTATGCTAACTGAGGAACTATATGGAATTGAAGTTACATATGGTTGTAATCTACCATGTGGGCACTGGGACTGAATCCAGGTCCTGTGTTAGAGCAGCAGTGCTCTTAACTTCTAAGTCATCTCTATTTTAAGCTTCTTACAGCCAAGGTTGGCCTCACCTCACTAGCAAAGGAGGACCTTTATCTGCAGATCTACCTACCTCCGCTTCCCAAGAGCTAGGATCAAAGGTCCATGCCACTGTACCTGCTTCTGTTTCCTTTGTGTGAATATGGTGTATATAGTGTGTGCACTTGTATGCACAGAGGGCTACAAAAGGGTTAGCATGTTCTTTCACTCTATCTTGTTCCTTTGAGACTGAGTCTCTCCCTGAACCTGGGGCTTAAGTTTTTTGCAACTAGGCTGGCAGCTAGCTAGCTATCGCCTGTCTTTGCTGCCTACCAGTGCTGGCATTACAGGTGTGCATGACCATTTCCATGTACCCAGCTTATTTAGTGGGTGCAGAAGTTCAAACTAAAGTCCTCAGGATTACTCAACAAGCAGCCTTAACCACTGAGCCATCTCCCCAGATCCATGCAAGTTCCTTAGTCCTATGTTTTTCCAGCCTGTTTCACACTAGTTTTACACTTTGAGTTTCGATTGTAAAACATCTTTAAAACCTTTTTTATTGAAAAAAATTTTCTCATATAAAATATTTTGATCATGTTCCCTCCCCCACTTCCTTTCAGGTCCTCCCTAACTCCCTACCTACCCAATTTTATGTTCTTTTTCTGTTTAAAACAATAATAAAACATCTTAATGTTTATGTGTTTGCAAGTATGTGTGGACCACAGTGTATGTGTGAAAGAGAATCAGCCCTCTCCACCTACCATGTAGGTCCTTGATATCAAAGATAGCAAACTCAGGTTGTCAGACATGGTGGCCAGTGCCTTTACCCACTGAGCCACATCCTTGCCCCTCTTTTTTTTTTTTTAATTTGTGTGTATGAATACCCACAGAGACAAGAAGACTGTCAGATTGCCTGGAGCTAGAGTTACAGGCAGTTGTCAGGCCTCCAGTCTGACTGCTACTCTACTCTTAACTCCTGAGCCATCTCTCCAAGCCCTCCTTTCTTAATCTCTTAATTGCTAGTACATTTGCCATGACATTTTGGTGATAATAAATCTTAGTTTGGGTTTAAAACAAGATACTGTATAACTAAATAAATGAATAAATGGAGCTGGAGAGGTGACTCAGCTGTTAAGAGCACTGGCTGCTCTTCCATAGGTCCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCTGATGCCTTCTTTGTCATGCAAGTCTACATGCAGATAGAGCATCTATACATTAAATAAATAAATCTTTTTTTTTTAAAGATACTGGCCCACACATGTATATCATTTGGGCTTTTCCTAAGTGAAATTGTTCACCAGGCAGTGGTGATAGCATACCTTTGATCCCAGCACTTGGGGGCAGAGGCACACAGGTCCCCAGGTTCAGAGCCAGTCTGATCTACAGAGCAGAGGTCCAGGATAGCGCAGAGCTACACAGAGAAACCCTGCCTCAAAAAACAAAACAGAACAAAACAAACCCAAAAACAAAAAGCAACAACAAAAAGGTTGTTCGGTTCCTCATTCCGTGTCTCTGTATTGGTATGAAAAATCCTTAGCTTGTCTCTGCAGCTCCCTTATGACAGCCATTTCCCAGCCTTGTCAAACTGCAATAGCAGGGCACTGCTACAGTGCAGACTGCCTCATTGTTACTGTTGATCCTGAATGTTAGCTTTCAAAGACATCCAGGGAACTCCAGCTCTGCAGGCTGTGCTGTCTGATAAGCAGAGTGAAGAGATGGTTAAAACTAACTGTTTCGTTCTTTAAGAGCCACTAAAATCTCAGTGTGTGCGTTATCCCTGCAGTCATAACCAAAGGGTTTGCATTTTGATGATACTGAGATAGGAGCTACGTGATCTGTGTAAATGGTAATTCCCTCTCAGTTTTCTGCGATGAGTGCATCTACATGTTGGAGTGTACCCACCACACCTGAGATACAAACTTGTTAAGGGATTTCAGGGAGCCATTTATAGGGAAAAAAAGCTGAGCTAGTTTCTTTGAATTTTAAGAAGTCCAAAGAATTGATAGCTTTCTTAATTTTGATTCCACAG
Seq C2 exon
AATCATCCTGATGTCGCAAACAAATTGGCTACTTGTCCCTTCAATGCTCGGCACCAGGTTCCCCGGGCTGAGATCAGTCATCACATCTCGAGCTGTGATGACAAGAGCTGTATTGAGCAGGATGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036831:ENSRNOT00000055275:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF052537=zf-U11-48K=WD(100=79.4)
A:
NA
C2:
PF052537=zf-U11-48K=WD(100=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]