MmuINT0075601 @ mm10
Intron Retention
Gene
ENSMUSG00000016206 | H2-M3
Description
histocompatibility 2, M region locus 3 [Source:MGI Symbol;Acc:MGI:95915]
Coordinates
chr17:37273719-37273912:+
Coord C1 exon
chr17:37273719-37273751
Coord A exon
chr17:37273752-37273865
Coord C2 exon
chr17:37273866-37273912
Length
114 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TCTCATTTGTTCTGTTAAAGGCA
3' ss Score
7.43
Exon sequences
Seq C1 exon
GGGAAAGATGAATCAGTTATACTCAGACTGCCA
Seq A exon
GTAAGTATGGTGGGATATGGTTCCTGATATGAGATAAGGTGGACAGGAGCCCATGGGGCAACACAGCCAGCTCATCTTGTGGTGTCTGATCAAGTCTCATTTGTTCTGTTAAAG
Seq C2 exon
GCAGGAACAGTGATTAAGTTCTGATGCTTCTTTCACCATTTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016206:ENSMUST00000038580:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types