RnoINT0122934 @ rn6
Intron Retention
Gene
ENSRNOG00000000763 | RT1-M3-1
Description
RT1 class Ib, locus M3, gene 1 [Source:RGD Symbol;Acc:3494]
Coordinates
chr20:1815074-1816417:-
Coord C1 exon
chr20:1816304-1816417
Coord A exon
chr20:1815108-1816303
Coord C2 exon
chr20:1815074-1815107
Length
1196 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TCTTATTTATTCTGCTATAGGCA
3' ss Score
8.77
Exon sequences
Seq C1 exon
GAGGATCGTCTCAGTCCTTTGTCGTCATCATGGTCATCATAGTAATCATTGTTATTCTGGCTCTCCTGGGAGGTGTGCTCACTGTTGTTTTGGTGTACAGGAGGAGGGGTGCAG
Seq A exon
GTAAGCAAAAGGGTAGCCTGAGTTATCTTCCTCACTTGTGGACTTCAGGTCTTAGGTGGAATTGGCCCTGCCTTTTCTGTAGGAAGACCTTTGACCCACCACCTCAAATGACACAATGGTTTATTTTACTTAATCATTGTATTTTATTGTGTATTTATGAGTGTATGATATAGGTACTTGTGTGTATAATGTAGTTATGTGTTCAGTGCATGTATGTATGTGTGTATATGTATGTTTGTGTGTGTACATGTGTACATGTGTGTATGTGTGTGTGCTTGTGTGTATGTTTGTGTGTGTATGTGTATATATGTGGGTGTATGTGTGTGTTTACGTGTATGTATGTGTAAGCTAGAGGTCAATACTGTGTCTTCCTCTATCCTTTCTGACTTTTCTTGAGATGGGATCTTACTAATTTGATTAGAACAGCTAGCCAAAAAAACTCCAGGGATTCTCCTATTTCTGTTTCCCTGCACTGAGATTATAGATGATAGATGTGAATCAACCAGTTGCAGACAGACTGGATATACACACAGTTTAAACAGTTTACATCTAAATCCAAAATAATTTAATCTTAAAAGATCAAAATTCTGGGGACTATTTTTTGACTCATGTAAAGACCTTCAGTTACACTTTGAAGAGGCGTTTACTTAAGGTGTGTAAAGTATCACAGGGGCCACTTTATCCCATAAAATAGCATATACATTTGCATCCACAAGCACTTAGGTGCACTAATGAAAGTCACACTGATGTAGCGTTGTGAGCAACGTCAACTAGGAAGCAGTATCACAAACAAACGCTCACCTTGCCTGAGTCTCTGTGGTGACAGTCTACTATGCAGGGGGCCATGTGAAAGAAAAGCTGTAATCAGAGTGGAAGCTCCCTGCTGAGAACAGAGTCCAGAAGGCTTTATTATACTTCCTGCATATCACCAGATTTTCAAATCCTTCCCTAAGTCTGCAGTCCTAGTTCTAGTAGCTTCCTTTGGGCCAGGATTAAGCCTTTTCATAGATCTTCACGGCACTGCTGCCTTCCTGGCCCCTTGCTCATTGCTTTCTTTCCATAGGGGAAAGATGAGCAGTTATACTCAGACTAGTGGGATACGGTTCCTGATATGAAATAGAGTAGACAGGAGCCATGGGGCAACACAGCCCGCTCATCTTGTGGAGTCTGACCATGTCTTATTTATTCTGCTATAG
Seq C2 exon
GCATGCTCTGATGCTTCTCTCACCATTTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000763:ENSRNOT00000000990:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]