MmuINT0077969 @ mm10
Intron Retention
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:62281033-62281906:-
Coord C1 exon
chr10:62281811-62281906
Coord A exon
chr10:62281133-62281810
Coord C2 exon
chr10:62281033-62281132
Length
678 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
CTGTCCCCTTCTTTTCAAAGGAA
3' ss Score
9.83
Exon sequences
Seq C1 exon
GGAATCTTGATCACGTGGACAAAGGGATTCAAAGCCACCGACTGTGTGGGTCACGATGTAGCCACTTTACTGAGGGATGCTGTAAAAAGGAGAGAG
Seq A exon
GTAACTTAATCCTTTTAAGATAATTTTTGCCTTGCGTGGGGCGGGGGAGGGTACAAAAATTAAGCTTGCTTTTTTTGTGAAGAATTGGAACACCACAGGAGCATGCGATTTGGAAGTGTCCCTGTCCCCACGCCCGCCCCAGTCACTGCCAGGCGGTCAAGTGACATTTGTCAGTTTTGTATCATTAAGGGATGGTAATATGGGCTGGTGAGCTGGCTTGACAGCCTGCCACCAAGCCCGAGGGCCTGAGTTTAGTTTCTAGGACCCATGTGGTGGAGTGAGAGAATCCTTTCCTGTGGTTTATCATTTGACCTACACACATGTGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACATGTGAAAAGGATGGTACACCCAAAGAGAGGTAAAATCATGACTCATAGGGATGGAACAATGGAAAGTTCCTGAGGGCCCATACAGCCGGGAACTGCCAGGCATTTCAGAGTGCAAGCACCGTCGGGCATGGATGGCCCTGTTGGCTGGAATAGACTTATAGACAGTATTGCTACTCTGTGTCAAGTTATCGAACTCAGTCAGGAAACCAACCCTGCTTCCCAGAAGTGTCCAGTCCACAGCCTGGACTAGCCGGATTCAAGCCAGGCCCAGCTGACCCTTCCCTACATCCCTGTCCCCTTCTTTTCAAAG
Seq C2 exon
GAATTTGACCTGGATGTGGTGGCTGTGGTCAACGACACCGTGGGCACCATGATGACTTGTGCTTATGAAGAACCTTCTTGTGAGATTGGACTCATCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012:ENSMUST00000116238:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCACGTGGACAAAGGGA
R:
CCACGATGAGTCCAATCTCACA
Band lengths:
190-868
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types