RnoINT0070947 @ rn6
Intron Retention
Gene
ENSRNOG00000046891 | Hk1
Description
hexokinase 1 [Source:RGD Symbol;Acc:2796]
Coordinates
chr20:31922876-31923722:-
Coord C1 exon
chr20:31923627-31923722
Coord A exon
chr20:31922976-31923626
Coord C2 exon
chr20:31922876-31922975
Length
651 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
GTGTCCCTTTCTTTTCAAAGGAA
3' ss Score
9.32
Exon sequences
Seq C1 exon
GGAATCTTGATCTCATGGACAAAGGGTTTCAAAGCCACTGACTGTGAGGGCCATGATGTAGCCTCCTTACTGAGGGATGCGGTGAAGAGGAGAGAG
Seq A exon
GTAACTTGATGTTCCTAAGATAATGTCTGCCTTTGGGGAGGGGTGTTACAAAACTGAAACTTGCTTTTTCTGTGAATTATTGGAATGCCGCAGAAGCATGTGATTTGGAGGTCGTATGCCCGCCCACCACCCACTCCAGTCACTGCCAGCGTTCTAGTGACACTGACACTTGTCCCTTTTGTATCATTAAGGGATGACATGGGGCTGGTGAGATGGCTCAGCAGCTGCCACCAAGCCTGAGGGCCTGAGTCTGGTTCCTAGGACCCACATGGTGGAGGGAGAGAGTCCTCTCCTGTGGTTTATCCTTTGGCCTGAGCACACGTGCTGTGGCATGTGTATGTACACATACTAAACAATGGTGAAGAATGGTCCACTCAGGGAGAGAGAAAATCATGACTCACAGGGACAGAAAGATGGAAAGTTTCTGACAGTGCACACACCCGGGACCCGCCAGGCTTTTCAGAGTGCAGGCCTCCGACATGGATGGCCCCGTTGGTGGGAATAAGCTTATAGGCAGTGTTGCCACTTAGTGAACACAGTCAGGAACTCAACCCTGCTTCCCAGAAGCGTGCAGTCCAGAGCCTGGACTAGCGGGGCGCAAGCCAGGGCTAGCTGTCCCTTCCCTACATACGTGTCCCTTTCTTTTCAAAG
Seq C2 exon
GAATTTGACTTGGATGTGGTGGCTGTGGTCAACGACACCGTGGGCACCATGATGACCTGTGCGTATGAAGAACCCACTTGCGAAATTGGACTCATCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046891:ENSRNOT00000072429:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.1=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(11.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGATCTCATGGACAAAGGGT
R:
CCACGATGAGTCCAATTTCGC
Band lengths:
192-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]