MmuINT0077983 @ mm9
Intron Retention
Gene
ENSMUSG00000000628 | Hk2
Description
hexokinase 2 [Source:MGI Symbol;Acc:MGI:1315197]
Coordinates
chr6:82685241-82686828:-
Coord C1 exon
chr6:82686524-82686828
Coord A exon
chr6:82685390-82686523
Coord C2 exon
chr6:82685241-82685389
Length
1134 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
ATTCGGGGTTCATTTTCCAGAGA
3' ss Score
6.57
Exon sequences
Seq C1 exon
TTTTGCCAAGCGTCTCCATAAGGCAGTGAGGAGGCTGGTGCCCGATTGTGATGTCCGCTTCCTCCGCTCTGAGGATGGCAGCGGCAAGGGGGCGGCTATGGTGACGGCGGTGGCTTACCGTCTGGCTGACCAACACCGGGCCCGCCAGAAGACCCTGGAGTCTCTGAAGCTGAGCCATGAACAGCTGCTGGAGGTTAAGAGAAGGATGAAGGTGGAAATGGAGCAGGGTCTGAGCAAGGAGACGCATGAGGCCGCCCCTGTGAAGATGTTGCCCACTTATGTGTGTGCCACTCCAGACGGTACAG
Seq A exon
GTACGTGGCATCGACGCCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTGTGTCGTGAGCCAAAAGATATCCAGTCCCCCTGGAGCTGAAGTTAGGGGGAGTTGGGAAACCCCTGATGTGCTTATTAGGAGCTTAACTTGGAACCTCTGCAAGAACAGTGTGAGCTCTAAACTGCTAAAGTTTCTCTTCAGCCCCATTAGTTTTGCTTTATGAAATGGGTCTAATGTAGCTCAGGCTGGCCTCAAATGTAGTCCAGGATGCTGTACAGGACCACCTTGAATCAACCTATGCTAGGATTGTTCGTGTGTGCAGACATTCAGACCAACCAATTTTTTTGTCTATTAAAAATTTGCTCTTTGGCTGAGAACTGAAACCAAGAGAGCCTCGCTCAAGTTCATACAACCAGTGTCAGCTGACATTCAGACCTAGGAATCTGCATTCCAGAGGCAGCTCTCAAATACTACATTAGTTGGGTCTACATGTATTTCCTGTTTGGCTCCATATAAAAAATTTCTGGTCCGTGATGGTTCATGGTTGGCACCGGCTCTCGAGGCAGAAGCTAGGGTTAGGTAGCCTGTTAATATGGGGCCTAGCTCCATTCAAGCACCCCTCAAAGATCACCTTTAAGAGGGAAAAGGAACGTGTTCGGTTGCCTCAGGGTCTTATATATAGCCCAGGTTGGGTTTAAACTCACAGTGTGGCTAAAGCTGGCCTTGAACTCCTGATCCTCTTCCCAAGTTCCACATCCCAGGTTCTGGGACTGCAGGCATTCCACTTTCCCTGACTTCAGTTTTCTTTGAAGAGTCCCTCTACTTCTGCTTCTCTTCCAGAATTGTACCCTAGGTGGCATTTGTCTTGGCTCAGATGTGACATTTAGAGAGTTTTAAGTATACTGTATTGGCATTCCTCATGTTCTGAAGGGCCGACTTGTGGCGTTCCACCAGATGGGCCCATTCGGATCTGGTGATGAAGATGTTGCTTTCTTAACTGCCAGGTGGCGCTCACACTCCATCTTCTCCCAAGACTTGAGTTTCACAATGTGTCTTCCACAACCCACGAAGGGAGCTATATTCTGTCACCCCAACTCATTATTCGGGGTTCATTTTCCAG
Seq C2 exon
AGAAAGGAGACTTCCTGGCCTTGGATCTTGGAGGAACAAACTTCCGGGTCCTGCTGGTGCGCGTGCGTAATGGCAAGCGAAGGGGCGTAGAGATGCATAACAAGATCTACTCCATCCCACAGGAAGTCATGCATGGCACTGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000628-Hk2:NM_013820:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCGTCTCCATAAGGCAG
R:
GCAGGACCCGGAAGTTTGTTC
Band lengths:
354-1488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: