HsaINT0076372 @ hg19
Intron Retention
Gene
ENSG00000159399 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:4923]
Coordinates
chr2:75107392-75108986:+
Coord C1 exon
chr2:75107392-75107696
Coord A exon
chr2:75107697-75108837
Coord C2 exon
chr2:75108838-75108986
Length
1141 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TCCCTGGGCTTATTTTCCAGAGA
3' ss Score
7.97
Exon sequences
Seq C1 exon
TTTTGCCAAGCGTCTACATAAGACCGTGCGGCGGCTGGTGCCCGGCTGCGATGTCCGCTTCCTCCGCTCCGAGGATGGCAGTGGCAAAGGTGCAGCCATGGTGACAGCAGTGGCTTACCGGCTGGCCGATCAACACCGTGCCCGCCAGAAGACATTAGAGCATCTGCAGCTGAGCCATGACCAGCTGCTGGAGGTCAAGAGGAGGATGAAGGTAGAAATGGAGCGAGGTCTGAGCAAGGAGACTCATGCCAGTGCCCCCGTCAAGATGCTGCCCACCTACGTGTGTGCTACCCCGGACGGCACAG
Seq A exon
GTACACGGCAGGGTTGCCACCTGGCTCACATGGTGGGCCTTTGTCCTGGTGTTGATACCCTGGGAGGGATCCCTTAGCATTAGCATTGGACATTTGAACCAGAACACGTTTCTTCAGCCGTATTACTAGGGAGTTCTAGTCTTTGATAAACTCAAACAAGGTGCTCCTCTGCAAACAGTAGTAATGGTCAACACTTATTGAATGCTTACTGTGTGTCAAAGCACTTTATGTGTATGAGCTCATTTAATCTTTGTTAACTGTTAAAAAATATTAGCAGTTAATTTTATGTATTCACCTATGTTTGACAGAAAACTGAGGCGCAGAGAAGTTAAGACACCTGCCTAAATTCACACAACTAGAAAATGTCGGAGCTGGGATTCAAACCCAGGAATTCAGGTTCTAGAATCTGCTCTTGCAATCACCACATTGGTCTGAGTCAGGGTTGGCAAACTATGGCCCATGGGCTGAATCTGGCCCACCACCTGTTTTTGTACATAAGGTTTTATTACACAGCCATGCCCATGCGTCTGCACGTTGCTTATGGTTGTTTTGCACTGTCTTGGCAAAGTTGAGTGGTGGCAGCAAAGACTGCATGACCCACAGGGCCTAAAACGTTTGCTGTCTGGGCCTTTACAGAAAAAGATTTCTGACCCCTGCTGTAAGTCTTGTAACCTCAGAAATGGTGGTCTTATTCCAATTCAGAGAAGACAGTCGATGAGCAGGCCAGTGTAGCACAGTTGTTACAGGTTCCAGAGACAGACTGGGATTTGGTCCCTGCTCTACCCTGTCCTGGTCGTATGGCCCCGGGCAAGTGATTTAACTATCAGCCAGATCCCAATCATCCTTAAGAGAGGAATGCAGTGTCTCCCTCACAGGGCTGCCTAAGGGTTGAACGAGGACTGTGTGTGAAGCATGTGGCACACTGTAATTGTCCAACAAGGGAGGGTTTTCTCAGTTTAAAAGATTTCCCTTCAGCTTCCTTCAGGGAGCTGGACTCTTCTGTTCCTTCTGTATTCTAGAATGTAATATAAAGTGGCATTTGATGGAACAGGAATGGTGTATTTGGATCGTTTTAAGTGTACTGTCTCCACATTCCCCATGTTCTGCCCCAACTTATCACTTCCCTGGGCTTATTTTCCAG
Seq C2 exon
AGAAAGGGGACTTCTTGGCCTTGGACCTTGGAGGAACAAATTTCCGGGTCCTGCTGGTCCGTGTTCGGAATGGGAAGTGGGGTGGAGTGGAGATGCACAACAAGATCTACGCCATCCCGCAGGAGGTCATGCACGGCACCGGGGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159399-HK2:NM_000189:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATAAGACCGTGCGGCG
R:
CAGCAGGACCCGGAAATTTGT
Band lengths:
348-1489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)