MmuINT0077984 @ mm10
Intron Retention
Gene
ENSMUSG00000000628 | Hk2
Description
hexokinase 2 [Source:MGI Symbol;Acc:MGI:1315197]
Coordinates
chr6:82734848-82735395:-
Coord C1 exon
chr6:82735247-82735395
Coord A exon
chr6:82734968-82735246
Coord C2 exon
chr6:82734848-82734967
Length
279 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AATGCCCTTTGTTTTCACAGCTT
3' ss Score
8.9
Exon sequences
Seq C1 exon
AGAAAGGAGACTTCCTGGCCTTGGATCTTGGAGGAACAAACTTCCGGGTCCTGCTGGTGCGCGTGCGTAATGGCAAGCGAAGGGGCGTAGAGATGCATAACAAGATCTACTCCATCCCACAGGAAGTCATGCATGGCACTGGAGAAGAG
Seq A exon
GTGAGGCGAGGGGCCGGAGAAAAAGGGGTGGTGGTGGCAGAGGTGATACATTAGGGAGGAGGGGAGGACATGATGGGTTGTGCTTCTGGGATGATTCAGCGACCTCCCGAATTTCAAAGACCCCAGCCTTTCTCGGCTCACCCCTGGCTTGAGGAGGGCAGTGATTCAGGGCCCTGGCAGAGTTGCTCTGGGTTGGTGCTGCCTGAGCTTGCATTTCTCAATGCTTGGGGCATCCCCCTCTGTCGAGGGCACCTCTCTCAATGCCCTTTGTTTTCACAG
Seq C2 exon
CTTTTCGACCACATTGTCCAGTGCATCGCGGACTTCCTTGAGTACATGGGCATGAAGGGCGTGTCCCTACCTTTGGGTTTCACCTTCTCCTTCCCTTGCCAGCAGAACAGCCTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000628:ENSMUST00000000642:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTCCTGGCCTTGGATCT
R:
CTGGTCCAGGCTGTTCTGCT
Band lengths:
262-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types