MmuINT0078749 @ mm10
Intron Retention
Gene
ENSMUSG00000079560 | Hoxa3
Description
homeobox A3 [Source:MGI Symbol;Acc:MGI:96175]
Coordinates
chr6:52183708-52200938:-
Coord C1 exon
chr6:52200837-52200938
Coord A exon
chr6:52183791-52200836
Coord C2 exon
chr6:52183708-52183790
Length
17046 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGGTGTTTATTTCTCTGCAGAGT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GCTACGTGTGCTGCCTGGTCATTCAAAGTGTCAATTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTGAAAAATGGCTCCCTCCATGTTAAG
Seq A exon
GTAAGCTCGCCTCTTGAGTTTATTTTCACTCTTAAAAAGTTTCTTGTCCTCTCTTTCTGTCTGGCTCAGTATTCAAAATGGGAGAACAAACTTTTCCCTCTGCCTGCCTAAATTAGCAAAGCCAGAGCCAGCCTTGTGGAGGCTGCGCGGTGAAGAATGCCTGTGGCCGGCCGAGAACGGCTTCCCCAGGCCTAACTTTAATTGCTGCACAATCGTGATGTTAATGACTTCCGCTGCTCCCGCCGGCGTGCAAAAAGATGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGTGTGTGAAAATGGGTCTGTCTGTGAAAACTTGGCAGCCCCGGGCCTTCTTTCTAAGGTTGGTCAGGCCCAGGCTCTTTGGGGGTCGTGGAGCTCTGGGAGTTGAAGGGACGCAGGCCACTGGAGGAGAGGGGTAAACTGAACTCGAGAGTTTGAAAGAAAGGCCCGGAAAGGACCGAGGCCGACACTGGCGGGATTCCTTGTGGGGCTGAGGCAATATGTCTTCGCAGGGCCAGGGTCATTTGGCAAGACTGAATTGAGGCGGGCAGCCTTTGGGCCTGAGTTTCAGACCGACTGGAGAGAGTGGAAACTGACTGGGGCCTTGGCTGTGTAGCAGGAGCAGGCTGCACCCACAGGATGTTGGGGACAGTGGGTCCCCACCTAGGAGGTACTCTGCTGTCCCCGCACCGGGCTAGGCCCAACCCTGTTAGTTCTTTTCATTTGACTGGTAGTGTTCTCACCAGCCTGTGAGTCTGAAGCAATAAACTTTATGGCCGGATTTAACTTTAGTCTTTGAATCCTCAGGGTAATTGAAAGGGGTTAAAGCGCTTTCTTTTCTTCCGCCTTGCCTGTCTCTGCCTCCCTTCTTTCCTTTCCCATCCCGGTCTTTGTAGGAATAAGACATCTATGCACAGGACCCTCAAAAGGCAGCTTAAGGGCTTCCCTAGATAACACTAAAGATAGAGAAATGTAACCCTCTCCAACTGCAGACAAATTCTCTCTTCTAAAACTGTGCCTAAAGTTTTAAGGGAAATTGAGGTGTCTTCAAATGCCCAACTTAAAAGTCCCCAGAGCCATTAGGTTGTTTTTCTTGACACATCATAAAGGGTACTTTAGGAAGAAATTACCCCTTTGTCAGTAGGAGATTTCCTCTTCTCTTTTGTTATTTGTTCTTTCTGTTTGATCCCAGGAAATTTACATAATCTATGTTTTCCAAAACAGTCTCCAAGATTGTACCAATGAGTGAAGTTAGGTAAAATATAAATTTCCTGGGTACAATTCCATCGGGGCCCCAGCCTCCCATGTGCTTAAGCCAAGCTTAAGTGGGAACTTTCTGGCCTGTCCTGGTGTCTTCTCAGGGTAGGTACCCACCAGAGACCTAATAAACTCCACCCAGTCCTGTCTGAGGAGCTAAGCCAAAATGTCCAACTGTGGTTAGAAAAACAAAATTAAGGACTCTTCTTTTTTTCTGGAGCTAGGTACTTTTCTTCAAGTACTACTAGTTGGTAAAGGTTTTTACCAAGTGCTTAAAGAGAAATGTTTTGAAGTGTTGATTTGAAATACCAAGTATTAATATGCAGAAGTCTCCTTCATTCAACATAAATCTACAGAAGTCCCAGATTCAGAGATCCAAAGAAAACAAAAACCTAGGACTTAAAAAAAAATCAAAGCTCTCTCACAAATCCCACTTTCCCTGACTAGTGGCAAGCTGATGAATGCATGGGGTTACTTTTGGGTGAAGTGAATATTGGTATTTGAGTATTCAGGAAGATGTGTCCACTTCCTTAGAAGGAACTAGGATAAAGCATTTACAGGGGTAGGTTCTTGTGATCTGCTGTGGCTAAGAATGATGGAGCCTTTGTTTTGCTGCTCCGAGTTTGGGTAGACAGTGTTGAGCTGTGGTTCTGTTTTGGTTCTGTGTCTGGTGATTTTGCTTGTATAATTTCTGGGTGGTTGAAATAAAGAGCAAAAGAAAGAAAACCCAAACAAACCAAAAGGAACAAGAGTCATAGAAATGCTGGCAGGTTCATGGTGTACCTAGGAAAAAGAGCATCTGCAGCATCCATTGGCCACACCCTGGGATGTGGGGATGGGTAAAAGGCCTGATGTTATCATATCCAACCAAATACATTCCTAGGGCTCTTTGGCACAAATTAAAAAAAAAAAAGACTATGAGTATTGTCAGCTTGCTTACTTCTGTCTCTTTTAATCTTCACAAGGATTAAGTAGAATTTAAGAGGGCAGGTCAACCCACGTGGAGTTAAGTGACTTTTAAGAAATACAGCATCCAGTCCCAACTGTGTGACTGTTATTGGAGGAAATGTTTTCTTTCTTACTATTTTCATGGGAAGCATACTTAAGAAGGTAGTTGGATATCTGTTCATTTTGTGGATTCTTTTGGGTCTTTTTTCTTAAAAGAGGAACTTAGAGAGGGAAAAAAAAACCCTCTCCCACTGAGGGCTTTATGAAGACATTCAGCTTCAGCTGGTGGCAGAAATCTGTGTGCTCTCTTGTAAAAGGAGAAGGTGGCAGAAGTGCGCAGGGCCTTGTTTGTTTCTACAAGCCAAAAAGAATATATCCCCTCAACTATCAGAGGAAGCTTCTGGTCACACTTAGGGGTTTGTTAGGGTTTCCCTGGTCTAATTTCACAACATTATACCAAGATCCTTTTTTCTCCTGTGATTTTCATTTGGTTCTGAAGAGGGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTTCTAGCAGAAACAGTTGTGTTCATTTGGATAATGTTACATCCAAACAAGTACACTACAGAAGACTGGAGTTAGAGATGAAGACAACTCTCTCAGCTTCCAAGAGGCCCTTAGCATCTCCCCTTCTCTGGCTGGGGTCTACCCATGGCTTGCTCGCCCTAAAAAAAGCAGAGACTCTTAAGCTGCAGCCCCTTGGCTTCTAAGGGGGGAATTTTCTTCTAGTTAGTGACATCAGTATAAACAGGATGCCAAGGCAGGAGTGCCGGGTTCAGCCCAGGCTGAACCAAACTGGGGAGGGAGCCCACCGTCCTAGGCTCCAGAACTGAAAGAGAAGCCCAGATTTGTTTTGTTCGGTGTTTTCTGAAAAAAAGAATTTTGTCTTTCTCTGTCAGATCCCTTTCTCACAAACATAATATTTGTTATGAAGGTTACTGGGTAATTATTGCGATTTTGTGAAGCAGCCTTTGCTGGAGGTGAAGTCTGTCATCGCCTAACAAATGGCGTCCACGCAGTTCACTGCCGGGTTAAGTAAATTCAGAGAAGATAAATCTGCACACCCTAGGAATCGCCAGCAGAGCTCGCTTTAGTACAAGTTCACAGTCAACTGGCCTGCCTGGGCCAAGTCTCCCAACAATCAAGGCTGCGCCTTTATTTTTAAATAAAACAAAATCCACCCCATCCGCTCTGCCCGATTCCTCTCCTCCCCTTCTTTTCTTACACTTTTGTTTTCAAAAGATTCTCCAGTTCTCCCCTAAATTGTCCTTGTTAGTGGAGTCGCAGGTGAATTCAAATGGATCTAGCTCCTAACTTTTGACTTAAAAAAGAAGCAGGAGGCTGGTTTGACAGGGAACATGGTCACAAATACACACAAAAAATATACACTCCATCCTCTATTCCATCAGGCGGTGGTGAGAGAACTGCCTAAGATCCAGAGCGCCCCTTCCCCCTGAAGCTCAGTGCTGTGTATCTTTGTGGTTAGCACGTTACAACTGCAGGTCAAAAAGTTGAGGGTCAAAAGTTTACATTGTGCAGCACTCTTAGTCATCTGCCCAGACAGAGTTTGATGTCAATTTCGAGCTGCGATCTTGACTATCACCACAAAAGATAAAATGGCTCGGAGTGACGCGTGTATCACGGTGTGGACTCCAGGTGAACCCTGGTGGTTGAATGACCTCAATTACAGAGGAAAGGATAGAAAATTCCTCTTTTCAGGAGTAATACATGCTGTATTTCATATTGAATGATCCCTTCCATTCTGAGGGAATAGCAGCAGGTAAATAGGCATAGATTATCAAAACACCAAAACCTTAAACGCCAAAGAACCAAGAATGGTTTGTGGGTTTGTCATCAAATAGATATGCTTAGAATTCATCAGAGGACCATTAAAACCCAAGTATCAAGTTTCTAATGTTTCATTATGCCCCCTTTATATGACAAAAAGGAGAGTGATTCTGATTGGCCAGGGTGCTTGGGTTTTATGTTGTAATACATATAATAATCTCCAAAGTGTGGGAGGAAAGGGCAGATATCTTACAAAGTGTATTCTTGGCAATTTTCAGGCATAGACTCTGATCCTGCTCCCTAACTGCAATTCACCAAATGCCAAGATTGTCAGAGCAGAGAAGTGGAAGCCCTAAGGACAGGGATAGGATTCCTAAAGCCCCCACCACCAGCAAGCACATGCTCATTAGTGCCGCTATGTTCATGCTGCTGAAGTTTTTCTGTTATAGTTATTATTAAGCCACCGTGGGATGTAAGAGGACTGCTACAATCTGCCAGAGTCATGGTACAGACATAGGCAGGGAACTGCTGCTTTCCTGCATGCTATGCCATGTTGTAAAACCACGGCTTCTGTTCTCCAGAAGAGTCTTCTAAATAATCAGTGTGGAACAGGGTGGGGGTGGGGACGAGGGAGACTCAGGGTGGGAAGGCAGGCTAGGGAGGAGCTGGGAGGGTGGGAGAGAGAAGGAACACTGTATTCAAGAAGCAGACGGGGAATCATGCCTCATTTGTCTGTTGCAAATGAAGTGTTAACCAATATTTTATTTTTCATACATCTAGATTAGCTTTAAGTGTCTGGGTTGGACTCTATTTCCTAGGGAACATATTTTCCTTTCCTATATATTGACCTTCAAATGATCAAGGTAGGAAAACAATGGTGACAAAGATAAAATATTTTCCTCTTCTTAATTTTGGGAATAACTTAAGGGCTCAGAATGTCAACCTTGCAGGGATGTTTAAGACAACCCCACACATTCAGGCTGATTAGATTTAACGGTACCAAGTGTATATTCAGTGGTAAAGTAAATATTTCTCAAATGCTACCTTCATGGAAGCAAGTAACCAGAGCCTGTCTATTGTACAGTAGGTAAGTTTTTACTCTGGCCAGGAGCTTGGAGCCAAATAGGTTTTGCCAGATGAAATGGAAAGAGCTGTGGTCACTGGAGTTATAGCAGTAAGCACACCACATCTGGTCTTCTCTTGAAATGAAAAGAACGGAACCCAGCCCCCAAATCGCTCACCCAGAAATTATGACTCTTCCATGGAATTTTTCATTGTACTTTTGGTTAAAGCCATGTGACATCCATCCTCAAGAAACACTTTAGCATCAATATTCAAAAAGCAACCTTTTAGCTAGTTTAGTGACAAAAGATACCTGTGGAAGTCACTGCTTTGAGAGTGCTTATCTCTTTAGAGGACTTTGATCTTTAGATAATATAGATAATCCTGGGTAAAAACTCATGTATAATTCTAAAATGAATATTAGTCCTATGTCTGGTCTTAATTGTTATTTTAAACCATCACCAGGAAATTGCACCCAAAACAAATTAATTGGTAAAAAATTGGTCTGGTCAAGTGTTGTTTTTCCGTAACCTGGTGTAAGTGGGAGGAAGCCCTTACATGCCACTACCAGGCAGTTTAAAATCCTGCCATTTCCCAATTCAGTCTAGAGAAGTGTTTGAGATAGAGGACAGCCCGGAGGCCCTCATGCTAAAGAACAAAGGACAAATACAGTCAATACATCCCATAATGCTTACATTTCCTTTGCCTTTTCCCCTTGGTTTTTCCTGGGAAGGACTGACCTGGGCAAAGCACCCAGCTCTCTAAAAGACACTGTATAGACCTTTTAGAAGCGCAAAGTCCAAGGCCGAGGTGAACTTCAGGTCAGCGCGTCTAACAAATATGAAAATGTCGGCTGGTGAGGGCGCGCCTGTGACTTAACAAAGACTGTCAATGTGTAAGATTAATAAGAAACAAAATGCACACGGTGTCACTGTTCGGTCACTTTGAAACTTGGGACAGGGTTGCATTCAAGTGGGAAGGCTGTTCCAAATATATTCAAAATGATTCAAATCAGATTCAAACCAGGCTGCAAACACTGGGTCCTTCTCGCCCTCCCTCTCCCTCAGACTCCCTTCGACTCCATCTGGGATGCAAGGACATGATGAAAAGTTATTTCACTTAATGGGGTTTTAAGATAGCGATTTGGGGAATATATGCTATCCCTGCACATGGAAAGGAACAATTGTGCTTACCAGTTTCCCAAGGAAAAAATAGTGCTTCAACCCCGCTTGGGACTAGAGCCAGTTGGTGTGCGAAGATTAGCAGGCTCCCTCTCTGCTCCATTTCAGGGCATCCCATCCCCAGGCAAGATGCTGCTGTGGTAAACTTTGGCTTGTTTTCCTAATTGAGTTACTTTCTTTCTACCTTTCGTTTGGTGTCTTGGATCTCATGTTGAAGGCAAGAGATGCTTCTTAGGTTTACTGTTTTTTTTCCAAATGATTATTTGATTCCATGGGATTTTTGCTATGGCTTGCTTGCAAAGGGAGGCTGTGGAAGGTTCAGGAAAGGTACTGAGATTGTTTATTACAGCCATAAATCTTGCAGTAAAATGTCAAAATGTCGGTGTGTGAGATAACACTTGGTGGTCCTGGCTCCGTTTGTGTTTATGATAGGAGCTCAAAGACGTGTTACAGGCCTTGGGGGATTGTGTCAGCCCATCCTCCTTAATAGAACCTCAGGAAACAGAGTTAAGTCCTCTAGCTTAACCGTATACAAAACAGTGCCTCCTTAATACTTAAAACGTGGAAACTCTGTAGACCATTCTGAGGCTAAACAACATGGATTTTTGTGTCTTAGACTCTGTAAATAATATTAAACAGACATGGTTAGGACTCCTCCAGTGCTCAGGGTTGGTGACACCAGAAGCAGACTAGATTTCCTCAAGCTTTTCATCCAACCTGAACACATGCAGATATGCAGTGCATGTGTATTTGTATGGTCTGTCTGTGTGCTACTAATGTTAGAGATGTCTCCTGTCTCATTTGTGTACCTATTTTCTTGCTATTTTCTTGCTAGAGAGAGATATCAGTTTAAAGTAGCCACATCAGGCTAGATTTCCTTCCTCCAGTCTAGAGAAGATATCTAGAGATTAGAATCTTTGTTGGTTTCCATCTATGGCTCAGATTTTCATTTAAAAAAAAAATCATGGTGCTTCCTGTCAGTGGACAGCTCTCTTTACCAGCACAGACACCCAGTGTGGAAAATCTCTTTGTACTACTTCAGGATGATTTCAATAAGAAACTAACATGATCCTTTTTTTAACCTCTTTCCCTAAATTACTTTAAAGATTAGTCTCAATAATAGTCTTCATGTGTCTAAGCATTAAATGACTATCTATCAAATAGGATATATCCCAGTATTTAGTAGCTCAAGTGAGTAACAGATATGAATGAAGATAGAATGGATGTTCTTTCTGAAGTGTCTCTAGGCTTGGGTTATAACTTTCCTGGTCTGCGTTTGAGAAGGCCGTTGTTCTATCCTGCTCTCTGAAAAATCAGCAAGGTGCACCAACGGAAACTGCTTTGCATACCCAGAGGAGAGTTATTTTTTAGAATGGCGGTGATAGTTTGCACTGCTTTACCATCATGCAAAGGATCTAGGCGTGTCTGCTATTCAGAAGAAAGAAAGAGCACAATTCCAGGTACGAGTGAGGCATCAGTATTTACTTCAAAGATCAACATTAGGTGGAATTAATAAGTAATTTATTTGTTAATAATAATGGCATAATTAGTTTACCCATCAAATTTCAATTACCAAATGGCAGGCAACAGTCCCTTCTCTCTCCTTTCCAGAGCTACTGATATCGTTAAAATGCTAATTTTTCAGCAATCGCGGGCTGGTCTGTAAATATAGCCCTTGGTTTAGATCCTGCACGAGGAAACAGCATCCAAAAGGAGAAGGGAGGGAAAAGTTAGAAAAGACCGATTGACAATTAGACCAGGCAGGGTCTTATTGTATCTCAAACTTGTTTTTGTTTGGTGATTGTTCTGAAACGCGAAGTTACTGGATTCGAAGCCGGGTTTTGTGCAGGCGTCGTCTCTCTTCCCACTCTGGGGTGGAGGTCTCACAATAGCGCCTAATAAAGGAGGCACATTTAGCTCTCCTCAGCACCTCCATCAACTGCAATATAGGAAGGTTCCAAGTCTTTAAATGAAAAAATAATGTACAAATTCTGCGTCTGAAAGAAAAAAAGTAAAAATAAGTATCCACGAGGTTTTAGTGGATCGCCCTCGCTTGCTGTACTTCCTTGACCCGCTTGTTCAGCGGCCCTTCTACCCATCCTCCCTGTGCAGCTCCAGCCCTGGCTTCGCAAAGCAGGGACTCCCTAACAGCCGGGTGGATGTGTAGGGCGTGGACAAAGAATCAAAGGGCGAGAAAAATGGGTCCGTAGGCCTCCTTCGTTTTATTCCAGAGCTAGGATAAAAAGCCAGGGTCTGCCTCTTGGTCCCAGTGCCCTTCCCTCTCCTGGAGGGCCTCGAACCCTCGGAGGACCACCCGAAGCCTGGTTGGACTGGAGATCGGCGCTGAGTCGTGGCGACCAGCTGCCCAGAGGCCTAGGACAGACGTGGGCAGGAACAGGGCTCGAAAGGACCCGCAGTCTAACAGGCCCCAACTTCTCAGCCGGAACCCAAGTTGGGGGGCCCGAGGAACCCAAGCTCGCTTCTCCCACCCTGAAGGCTAGCAGCATCCATCACGCATCCCCCGCGCGTTTCCTGATCCGGGTCCGCGCGCGCGGATTTCCCATTGGCCGGATCGCAGCACGTGGGGCGCGGGGGCGGGGCGCGCAGGGCCACGGGGAGCGCGCGCGGGCGGGGGAGGAGCGGCGCGGACTTCGGCGGCGGCGACGGCGGGAGGGGGAGGGGCAGTCGTTTGACAGCGGGGGGAGGGGCGGGCGCCGGGGCCGGGGGGGGGGGGGGGGGGGGATGGGAAGCGCGGCGAGAGGGGGAGGGGCCTCGGCGAGCGCAGAAAAACGACACCGCGAGAAAAATTAGTATTTTTGCACTTCACAAATTAATGACCATGAGCTCGTTTTTGATAAACTCCAACTACATCGAGCCCAAGTTCCCTCCTTTCGAGGAGTTCGCCCCGCACGGTGGCCCGGGCGGTGGGGACGGCGCCGTGGGCGGGGGTCCCGGCTACCCGCGGCCCCAGAGCGCCCCGCACCTGCCGGCCCCGAACCCGCACGCGGCCCGCCAGCCCCCCGCTTACTACGCGCCGCGGGCGCGCGAGCCCAGCTACCCCGGGGGCCTGTACCCCGCGCCCGCCGCCGCCTGTCCCTACGCCTGCCGCGGGGCCAGCCCCGCGCGACCCGAGCAGTCCCCGGCCCCCGGCGCGCACCCCAGCCCGGCCCCGCAGCCCCCCGCGCCCCCTCGGCACTGCGCTCCCGGCCCCACCACCCCGGCTGTCGCGACGGGGGGCAGCGCCCCCGCGTGCCCGCTGCTGCTGGCGGACCAGGGCCCGGCGGGCCCGAAGGGCAAGGAGCCGGTGGTGTACCCCTGGATGAAGAAGATCCACGTGAGCGCCGGTATGTGGCGCCGCCGGGAGGGCAGCGGGCGTGGGGGCGCGGGGCAGGGCGCGGGAGGGGACCCCCATCTGGCCGGCGCTTTGGCTGTGGGTGTGTGCGCGCCGCCCGCAGCCTGGTCCTAACGTGAGAACCCTTTTGTACCCAGGGTCCCTTTATCCTGAGATTTACGAGACGCCAAACTGTTAGGGCAGTAATTATAGCCCCCATAAATTTAATTGCCCTGGCAGAGGCTCCCGGCCATGTGTCTTTGAAGCTTTTCTTCAGCCCCAAAGCCCAGCACCATTCTTTATGGCTCTCGGGTGTTTCCCGTTGTCAATAGCCTGTGAAACATTTTCTTTGCCTTTTTATGTATCTTGTGTGAACTTGGTGTCAGGTTATTATATAATGATGATGTCCGATTGCTCTTCCCCACCCTATCTCCTCTCTCCTCCCCTCCTCCTCTTCTACTTCTTCCTCTTTGGCCTTCTCTTTCGGGGTTCTGGTGTTCAGTCAACTCCAGTTATAACGGAGGCGAACCTAAGCGCTCTCGAACCGCCTATACCCGGCAGCAAGTCTTGGAACTGGAGAAGGAATTCCACTTTAACCGCTACCTGACCCGGCGGCGCCGCATCGAGATCGCCCACACGCTCTGCTTGTCGGAGCGCCAGGTCAAGATCTGGTTTCAGAACCGGAGAATGAAGTGGAAGAAAGACCACAAACTTCCCAACACCAAGATGCGATCTTCCAACACTGCCTCGGCCCCTGCCGGCCCGCCTGGGAAAGCACAAACTCACAGCCCACACCCCCATCCCCACCCTCTCCCTGGTGCTTCCACACCCATTCCCTCCTCCATATAATCTAGAGACCTGGATCAGTTTCTCTCACTTATGTGCCCTACTCATCTCCTGCTCCTGTCCTCATCTGCTCTTCCCTAAGTAAACCCGAGACACCAAAACAAAATCCAACTTGCTGGAAACCATAACCAAAAAGAAGACATTATCCCTGGTTGGTGTGACCCCTCCAAGAGGACGTCTGTCCTCGTCCTCGTTACTGCTTAGTGGAACAACCTGCTGACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAAGCACTGGCCATCGACTACCTTTGAGTCAGCCAGACAGCACGTGCTGACTGGGGACATGTACTTGTATGCAGAAGAAGCAGGCCGGTTCCCAGCTTCCCAGCTTTCTAACCTTCCTTCCTCTTCTGCGTTAAGGCAGCTCACATGAGCTTTACTGAGTAGACTTTGTGGACCTCACCAGATTATTTAATTTTCAAAGTGTGTAGACCTTGATGGTAGGTGTGGCATGTAGTTTCCTCTCCTTGCATTTATTTAAGATACTGTTAGAGAGATATTGTTGTCTTATACTGGGGCACAGCGTTGGGGAGAGGGAAATGCATTTAGACTCACTTACAACTGTACAGAGAGATATGGTTGTATAAAGAGGAATGTGCTAAGAATAAACTTCAGTTTATAAGACATTAAAAACCTAAGAGACAGATTTGTGTGTGTTCTAAGCTTAAAAACCAAACCAAACCAAACTACCCCAAGCCTCCTCTTGGTTGAGATACTTGACCTAGTGCGCAGAAGCCTTGTAGACAGGGTGAGCTGGGGTCACATTCTAAGCACACTCACAATGTGTGTGTGTGTGTGTGTGTGTGTGTTTAACTTGGTCTGAATTCTTGCCAAGCTTGACCCACTGTGGAAGTGTTCCAAAAAGCGGGAAGGCTCTTGAGCCCTGAGAGGGCTCCTCTTCTTCCCAAACTTGGCCAGGCTTTCAGGCTTCAAGTCTCTGTAAGGCATAGAACCGTGTGTGTCCCTGCAGTGAAAGGTGAGACCTTGCAGAGCAGAGGCCTGGAGCTTCTGCAGCTGTTCTGTAGGCTGAACTCTGAGCACACTTGGAAACAGGCATTCCCTTGGCGTTTGCTGCACCTTCACACTTCATCTGCCTGTTTCCCTGGAGATAAAAAATAGTTTATGCAAAGGGTTGCGCTTGCCTTTTGGTTTTTGGCTGGTCTTAAGGTCTTTGCGCTGAGCACAGCTTGGGAATTTTTTGTTTGCTTCTCTGAGAAGAGCTTATAGAGTAAAGTGAACTTTCCCACCACACTCTCCAAAGCACCCTAGGAGGAAATCAGAAGCGTAATGATACCCTAAAATGCACCCTACCCCTACACAAGGTAGGTCTGGAAGAATTCACTGTTGGAAGGAAGCCAGACTAATCTGGGCCACTTTCCTCAAATGCTCTGTGGTGTTACTGTGCACTCCCAGAGAGCCAGATCTTTGAAAACATGAAAACTCATCTCTCAATCTCTGTAACTCTAGTATTTGTGCAATGGTTGAAATTTGATGCTCAGGCATCACACACACACACACACACACACACACACACACACACACACACACTGAATATGTACCTGGCCTTGAAACAGAGCAGTTTGGGGGATTTTATAGTAAATGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGTTTATCTAACTCTGTAATGTTAGAAGAGATTTAAAACCATTTTCATTAGTGGGACAAGCTCAGCCACCCATGCTTCAGACCAGGGAAATTTTTCTCTACCCATAGATAATCCAGTTTTTAGAAAGAAGCAATGGGCTCTAGTCTCTGAGAGGCCAAGAAAATTCATGGGGAAGGAGTACACACCCCTTCCCAAGCCAGGAAGGACCAGGCATAAAGTGTGCTTTGTAAGGTGTGAACAGGAGCTAAGCATTTCTGGAGGCAATGTAGCTGCTGCTACAACTTATTAGCCCCCCCCCCACACACACACACTACATGCACTTGTAAAGCAAAATTAAATCACACTGAAAATAGCAATTTCCCCGGGAATCATTAATCACCTCATACAATAAATACTTCTTTGTAATTCAACAGCAATTCTGAAAGGCATTCTCTGGGAAAAGTCTTTGGAGGAGGGGGGGGGATAATGTAAATAATGCTTTCTCTCAGGCAAATAGGCAACATTTTGGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCACTCAGTGGAAATTGAGTATCAAGCCACAAAACCTCAATATTTTTTCAACTCAGATTTTCATCACATAAGGTAAATTCTTATATTTCTCCTCAGTGGGGAAGGACGGATCTGAAAGGCTTCCTGGAGATCATGGTAGGTAGGACATCTTTCATTTGTGCATTCAGAAAAGGAAGAGAGAGTCAAAACAGCTTTTTTTTTCTGCTGATTTGGGATAAAGTAGCATTTTTTTGTATTGACAATTGATAGTATTGGTGTTTTGTAAAACCAGGATTACTGAAAATGCTACAAATGATCTCTTCGTGGTAGGTATTCTATTTGTGATTCAGCCTTTAAGGGAGCTTGCTGTAACAGCTTAGAAAATCTCACTGTGCATCCCTAAAATCATTCATTGTCTGCCCTTTGTCAGGCTAACCATAAGAGTTCACCGAGAGGACAAATTTTCTATCTCATTAATTGTTTTTTTTTTTAAAGCAAACCTACTAGTCCTTCAAACCCTTGACCTTTAAAAACAGTATTTTGAGTAAGCTGCACCGTTCTCTTACCAAAACGACCCCTGCACGGATGCTCTTCTGTTCTCTTCCCTTTACTTCCCATCCCCCCTCAGTACACACTTATCCGATTTAGTCACAGAGCCAAGCTGTGCATGACTCTGGAGAGAAAAGTTTTGTCAACATCTGAAATCAACCTAAATCGGATAAGAGACACTTTAATGGTCACAGTTTGAATTAAGTACTTAACACTCTCCCCCTTGAAGAAAAATGTCAGTTTGCAGGCGTTCTTTGCTAGTTTTGCTGAAATCTACGATATACCTGGTGTTTTATTACAGCAGGAATTCATCTGTGACAGGCATAGTGGAGTACTTAATACCCAGGATGGAGCTCATGGGAAGATTACTCAGATATATGGGTGGGCCCATTCACACCGACTCTGTCTTTATACCAGCAATCCCGGGGTGCCCTAGTCCCTCTCCTTCTTCCCCTTCTCCTTCTTCCCCTTCTCCCACATCTCCTGGGCACCTCTGTTCCCCTAAGCTCTCACACTGTGTCACTGTCCCCTGCTGCTTTCCCTCCAGCAGTTCCAGCAGAGAAACAGATCAGCAACAGCAGCAGCCCTTTAGAGTGGAAGGAGACATCTCAAAGAATAAATGTAGCAAAGAACAACTTCCAACTTCCCATCCCTGTGAGTGGGTTCTCTAGAAGCAAAGACCTTCACTATCATTCTATTGATGTCTGCTTATATAAATGCACACATACACACACCTGCAAGGAAGAACTCAGGCTCAGCTTTTCCCAATGGCTGTTTCTGGTATCCCCTTTCCTATATTATACATTGGATCAAGTAAAACAAAACAAAACTGTTTTGCACCACCAAGAGGATGGAATGTGCCCAGTCAGTGGTGGTGCACACCTTTAATCCCATTATTTGACAGGCAGAGGCAGGTGGATCTTTGAGGTCGAGGCCAGCCTGGTCTATAGAACAAGTTCCAGGACAGCCAGGGTGACATGGAGAAACCCTGTTTTGAAAAAACAAACACAAAGAAGCAAACAACAACAACAACAACAATAAAGAGGGTGGTATGAAAAATCAGAGGAGGGGAAGGAGGAAGACATGGGATAGTACTAGGAGGTGTCAGGAAACCTTCTAGCCTGTAGCTTCTACCTTGGAACTTCTAATTTGAAGGGGACTTTAAGTGTTCAAATTGAAAGGAGACCATTTTGCTTCAAGTGTCTCAGTTCACAAGCAAGGACACTGAAGCAGTTGAATGGCTCTTAAAGTTCCCCCATGATAGTGAGCATGTAGGGCATAGAGCCTTTGCCATCACTCTGAATGAACAGAAGTGCATAGGCATCTTCCTGCTGAAGGAGTTATTCTGTTTTCGTTGGTGATAAACAAGAATAGAAGGCTGGGCATATAGATATCTCTCTAGGCTTTTGCTGATGTGTAGGGCCACACAGGTGTGTGTATAGTCTGAAAGAAGAATGCATGTATCACTAAGGCTGCCTTGTGAGAATATATAACTAACTCTCTCCACCCCCTAGTCTTGGCACTCAAGCAGGTGTCTTGACCCCTGGGTTCAGGTGAGGGATGTCTGGTACTTTGCCGGGCTAGTAGCATGACTGCTATGCTCAACCTAGCACTTCCATGCTGTTCCCTTTTAGGGAAAGGGTGGTTGTGTTCTGGAGGCCTGGAGGGGTGGGGGGGGGGAAGCCAAGTATGGGCTTTGGTTGCAGCTGACAAAGGTGTAGCGCCTGTCAGAATAGAGGGAGATATTGAAATTGTGATCTCTTGTGGTCATGTGACTCGTTAAATAATTAATGCAGATCATCAGGAGTGGATCTGAGTCGTCAGGGCCGCACTTCTAGGAACGAATCTCTCAGTAGTGAGACTCCAACTTCCTATTTGATTTTTAAATACACACACCTTCAGATTTATCTCCAAAAGCGTTTAACTCCTTCGGGCAAGAGCCCTTCCACGTGGAGAACAGAATGCCGGGTCAAAGGCTTTCTTGCAAGGCTGCTGGGAGTCCAGGGAGGCTGTGTCCAGGGAAATGTGAGTTCCGGCTCAGACTTTTTTTTTTTTTTCCGGTCATATCCTGGTTTTGGTGATGAAGTGGGACAGAAGCGCAGACAGTTGGTAATGTTCTGATTCACGCTGGGGAAGGCTTCAGAGATACCACAGGAGGAGCACGCGGCTTTGTTCAATTTTTCCCGGCGTTCATAAATCACCAGCGCTAGGCGAGCGAGGGAGCAAGTAGACGCCAAAAAAAAAAAAAACGCGGAGAGAGGCCACAACAACGGCTGCAGCCATTGCAGAGCAAGAGACTCGAGCAGCGTCTCTCTGTGACTCATTAGTCTGAAGGATTTATGGGAAACAGGAATCATGAATATTAGACTTGAGAATAAAAAAGATAGCAACAACAATAATAACCATAATAATTACAATGCTCCTAAGCCTTGTGCTTGTGATGGTGGTGGTGGAGGAGGAGTAGGAGGAAGAGGAGGAGGGGGTAAGAGGAGGGGGAGGGGGTGAGAACCGGGGCACAGATCTTTCTGGGATGAAGTTGAGTAGCCAAGTAAGTAGCAGCTAGACCCCACCTTGATCAGGATGGCACCAGGAGTCTCAAGACCAGGGGGCTCTCCCCTGGAAAAGTAGGAGTTTGACAAAACAAAGGGGCCCAGCGAGGATGCTGGCTGGCCCTAAGCACCCTTGTGCAGGGCAAAGGCTGCGGGTGGAGTTGTGGCAGAAGGCAGCTGCCAGTTTGCTGCTACCCCCTCAGCGGTCTAGGAGGCTCCCAAGCCAAGAGTCAGGCAACTCCCTAGCTTCTTGGTGGTTCTTTGCTGGCTGCCAGCCGGATTGCATAGGGGTAGGATAAACCTACACAGGGCTGGTTTGGAGCAGGTTGGCAAATGGCGAGTGAGTAGTTTAGGGTCAGGGCTATAGAAGCAAAAGTCCTGCACAGGACTAACAAGCAGAGGACTAACAAGCTGGTACCATTCTCTGCCATTTCCTGATGTCAAAAAGCTATTTGGAGGCACCTTGGCCATTTCCTGGTTAGCAGGCAAGGAGGTGTTAAAGTGGGGAGGCATGAGGCTGGGGGTGGGTGGGGGCTTGCACAGGTATGGCTGGTATTTATTGTCCAGCACTTTGGTCTTGCTTGGTTTCTAGAAACAGTAGTTGTTCCGGTTTTAGTGACTGGGCACTGTTTTAGTCCTGCAAGCCCACCAGGACCAAGAAATAGCTTGCCCCAGCAATTGGGTAAATCAGAGGACAAAACCTCCCAATACTGCCTCCGATCTGTGGGGCTGAGCAGGGGTCTGATTTCCCGCCAACAGAAATGAACACTATTAGTGGGGTTTCAGCACAGTCTGATTGAATGCTTCCAGACAAGGCTTTCCATTGTTTGCAAAAGAAAATAAAGCTTGTGTTCACATTCCCCAAGCTGGGGTACATCCAGAGCTCAGCCACTGGATCCAGCATCACCAGCAAAGCTGCCTTCTTCTTCCCTCCCTCTGATTCATCCCCCCCACCCCCCAAAAGCTATACAAAAGGAAACTAAGATTGTGGGTGCAGAGATGAAGTATGTATTTGTTTTACAAAAATAAATCACCATCTTCGGGCCATTTGTAGACTGGAATATTTCGAGCTATGAGTGTGTCTCATGGACCAGTGCCCTGGCGACAACTCCATGTCCGCGTCACCCTGGGGCCACCCTGGCGCCCACACAGGACACGTTTCTAGCTCCAGTCTTCACTCCCTTCCTTCACAGCCACTATTCACCCTCTGGTGTTTATTTCTCTGCAG
Seq C2 exon
AGTGCCTGGACACTGGAAAAAAAGATTCCCTGAGCACCTGGAACTGGAGACCATTCCTGGTTCAGATTTAAACATCTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079560:ENSMUST00000114434:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types