Special

MmuINT0078749 @ mm9

Intron Retention

Gene
ENSMUSG00000059723 | Hoxa3
Description
homeobox A3 [Source:MGI Symbol;Acc:MGI:96175]
Coordinates
chr6:52133707-52150937:-
Coord C1 exon
chr6:52150836-52150937
Coord A exon
chr6:52133790-52150835
Coord C2 exon
chr6:52133707-52133789
Length
17046 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGGTGTTTATTTCTCTGCAGAGT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GCTACGTGTGCTGCCTGGTCATTCAAAGTGTCAATTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTGAAAAATGGCTCCCTCCATGTTAAG
Seq A exon
GTAAGCTCGCCTCTTGAGTTTATTTTCACTCTTAAAAAGTTTCTTGTCCTCTCTTTCTGTCTGGCTCAGTATTCAAAATGGGAGAACAAACTTTTCCCTCTGCCTGCCTAAATTAGCAAAGCCAGAGCCAGCCTTGTGGAGGCTGCGCGGTGAAGAATGCCTGTGGCCGGCCGAGAACGGCTTCCCCAGGCCTAACTTTAATTGCTGCACAATCGTGATGTTAATGACTTCCGCTGCTCCCGCCGGCGTGCAAAAAGATGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGTGTGTGAAAATGGGTCTGTCTGTGAAAACTTGGCAGCCCCGGGCCTTCTTTCTAAGGTTGGTCAGGCCCAGGCTCTTTGGGGGTCGTGGAGCTCTGGGAGTTGAAGGGACGCAGGCCACTGGAGGAGAGGGGTAAACTGAACTCGAGAGTTTGAAAGAAAGGCCCGGAAAGGACCGAGGCCGACACTGGCGGGATTCCTTGTGGGGCTGAGGCAATATGTCTTCGCAGGGCCAGGGTCATTTGGCAAGACTGAATTGAGGCGGGCAGCCTTTGGGCCTGAGTTTCAGACCGACTGGAGAGAGTGGAAACTGACTGGGGCCTTGGCTGTGTAGCAGGAGCAGGCTGCACCCACAGGATGTTGGGGACAGTGGGTCCCCACCTAGGAGGTACTCTGCTGTCCCCGCACCGGGCTAGGCCCAACCCTGTTAGTTCTTTTCATTTGACTGGTAGTGTTCTCACCAGCCTGTGAGTCTGAAGCAATAAACTTTATGGCCGGATTTAACTTTAGTCTTTGAATCCTCAGGGTAATTGAAAGGGGTTAAAGCGCTTTCTTTTCTTCCGCCTTGCCTGTCTCTGCCTCCCTTCTTTCCTTTCCCATCCCGGTCTTTGTAGGAATAAGACATCTATGCACAGGACCCTCAAAAGGCAGCTTAAGGGCTTCCCTAGATAACACTAAAGATAGAGAAATGTAACCCTCTCCAACTGCAGACAAATTCTCTCTTCTAAAACTGTGCCTAAAGTTTTAAGGGAAATTGAGGTGTCTTCAAATGCCCAACTTAAAAGTCCCCAGAGCCATTAGGTTGTTTTTCTTGACACATCATAAAGGGTACTTTAGGAAGAAATTACCCCTTTGTCAGTAGGAGATTTCCTCTTCTCTTTTGTTATTTGTTCTTTCTGTTTGATCCCAGGAAATTTACATAATCTATGTTTTCCAAAACAGTCTCCAAGATTGTACCAATGAGTGAAGTTAGGTAAAATATAAATTTCCTGGGTACAATTCCATCGGGGCCCCAGCCTCCCATGTGCTTAAGCCAAGCTTAAGTGGGAACTTTCTGGCCTGTCCTGGTGTCTTCTCAGGGTAGGTACCCACCAGAGACCTAATAAACTCCACCCAGTCCTGTCTGAGGAGCTAAGCCAAAATGTCCAACTGTGGTTAGAAAAACAAAATTAAGGACTCTTCTTTTTTTCTGGAGCTAGGTACTTTTCTTCAAGTACTACTAGTTGGTAAAGGTTTTTACCAAGTGCTTAAAGAGAAATGTTTTGAAGTGTTGATTTGAAATACCAAGTATTAATATGCAGAAGTCTCCTTCATTCAACATAAATCTACAGAAGTCCCAGATTCAGAGATCCAAAGAAAACAAAAACCTAGGACTTAAAAAAAAATCAAAGCTCTCTCACAAATCCCACTTTCCCTGACTAGTGGCAAGCTGATGAATGCATGGGGTTACTTTTGGGTGAAGTGAATATTGGTATTTGAGTATTCAGGAAGATGTGTCCACTTCCTTAGAAGGAACTAGGATAAAGCATTTACAGGGGTAGGTTCTTGTGATCTGCTGTGGCTAAGAATGATGGAGCCTTTGTTTTGCTGCTCCGAGTTTGGGTAGACAGTGTTGAGCTGTGGTTCTGTTTTGGTTCTGTGTCTGGTGATTTTGCTTGTATAATTTCTGGGTGGTTGAAATAAAGAGCAAAAGAAAGAAAACCCAAACAAACCAAAAGGAACAAGAGTCATAGAAATGCTGGCAGGTTCATGGTGTACCTAGGAAAAAGAGCATCTGCAGCATCCATTGGCCACACCCTGGGATGTGGGGATGGGTAAAAGGCCTGATGTTATCATATCCAACCAAATACATTCCTAGGGCTCTTTGGCACAAATTAAAAAAAAAAAAGACTATGAGTATTGTCAGCTTGCTTACTTCTGTCTCTTTTAATCTTCACAAGGATTAAGTAGAATTTAAGAGGGCAGGTCAACCCACGTGGAGTTAAGTGACTTTTAAGAAATACAGCATCCAGTCCCAACTGTGTGACTGTTATTGGAGGAAATGTTTTCTTTCTTACTATTTTCATGGGAAGCATACTTAAGAAGGTAGTTGGATATCTGTTCATTTTGTGGATTCTTTTGGGTCTTTTTTCTTAAAAGAGGAACTTAGAGAGGGAAAAAAAAACCCTCTCCCACTGAGGGCTTTATGAAGACATTCAGCTTCAGCTGGTGGCAGAAATCTGTGTGCTCTCTTGTAAAAGGAGAAGGTGGCAGAAGTGCGCAGGGCCTTGTTTGTTTCTACAAGCCAAAAAGAATATATCCCCTCAACTATCAGAGGAAGCTTCTGGTCACACTTAGGGGTTTGTTAGGGTTTCCCTGGTCTAATTTCACAACATTATACCAAGATCCTTTTTTCTCCTGTGATTTTCATTTGGTTCTGAAGAGGGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTTCTAGCAGAAACAGTTGTGTTCATTTGGATAATGTTACATCCAAACAAGTACACTACAGAAGACTGGAGTTAGAGATGAAGACAACTCTCTCAGCTTCCAAGAGGCCCTTAGCATCTCCCCTTCTCTGGCTGGGGTCTACCCATGGCTTGCTCGCCCTAAAAAAAGCAGAGACTCTTAAGCTGCAGCCCCTTGGCTTCTAAGGGGGGAATTTTCTTCTAGTTAGTGACATCAGTATAAACAGGATGCCAAGGCAGGAGTGCCGGGTTCAGCCCAGGCTGAACCAAACTGGGGAGGGAGCCCACCGTCCTAGGCTCCAGAACTGAAAGAGAAGCCCAGATTTGTTTTGTTCGGTGTTTTCTGAAAAAAAGAATTTTGTCTTTCTCTGTCAGATCCCTTTCTCACAAACATAATATTTGTTATGAAGGTTACTGGGTAATTATTGCGATTTTGTGAAGCAGCCTTTGCTGGAGGTGAAGTCTGTCATCGCCTAACAAATGGCGTCCACGCAGTTCACTGCCGGGTTAAGTAAATTCAGAGAAGATAAATCTGCACACCCTAGGAATCGCCAGCAGAGCTCGCTTTAGTACAAGTTCACAGTCAACTGGCCTGCCTGGGCCAAGTCTCCCAACAATCAAGGCTGCGCCTTTATTTTTAAATAAAACAAAATCCACCCCATCCGCTCTGCCCGATTCCTCTCCTCCCCTTCTTTTCTTACACTTTTGTTTTCAAAAGATTCTCCAGTTCTCCCCTAAATTGTCCTTGTTAGTGGAGTCGCAGGTGAATTCAAATGGATCTAGCTCCTAACTTTTGACTTAAAAAAGAAGCAGGAGGCTGGTTTGACAGGGAACATGGTCACAAATACACACAAAAAATATACACTCCATCCTCTATTCCATCAGGCGGTGGTGAGAGAACTGCCTAAGATCCAGAGCGCCCCTTCCCCCTGAAGCTCAGTGCTGTGTATCTTTGTGGTTAGCACGTTACAACTGCAGGTCAAAAAGTTGAGGGTCAAAAGTTTACATTGTGCAGCACTCTTAGTCATCTGCCCAGACAGAGTTTGATGTCAATTTCGAGCTGCGATCTTGACTATCACCACAAAAGATAAAATGGCTCGGAGTGACGCGTGTATCACGGTGTGGACTCCAGGTGAACCCTGGTGGTTGAATGACCTCAATTACAGAGGAAAGGATAGAAAATTCCTCTTTTCAGGAGTAATACATGCTGTATTTCATATTGAATGATCCCTTCCATTCTGAGGGAATAGCAGCAGGTAAATAGGCATAGATTATCAAAACACCAAAACCTTAAACGCCAAAGAACCAAGAATGGTTTGTGGGTTTGTCATCAAATAGATATGCTTAGAATTCATCAGAGGACCATTAAAACCCAAGTATCAAGTTTCTAATGTTTCATTATGCCCCCTTTATATGACAAAAAGGAGAGTGATTCTGATTGGCCAGGGTGCTTGGGTTTTATGTTGTAATACATATAATAATCTCCAAAGTGTGGGAGGAAAGGGCAGATATCTTACAAAGTGTATTCTTGGCAATTTTCAGGCATAGACTCTGATCCTGCTCCCTAACTGCAATTCACCAAATGCCAAGATTGTCAGAGCAGAGAAGTGGAAGCCCTAAGGACAGGGATAGGATTCCTAAAGCCCCCACCACCAGCAAGCACATGCTCATTAGTGCCGCTATGTTCATGCTGCTGAAGTTTTTCTGTTATAGTTATTATTAAGCCACCGTGGGATGTAAGAGGACTGCTACAATCTGCCAGAGTCATGGTACAGACATAGGCAGGGAACTGCTGCTTTCCTGCATGCTATGCCATGTTGTAAAACCACGGCTTCTGTTCTCCAGAAGAGTCTTCTAAATAATCAGTGTGGAACAGGGTGGGGGTGGGGACGAGGGAGACTCAGGGTGGGAAGGCAGGCTAGGGAGGAGCTGGGAGGGTGGGAGAGAGAAGGAACACTGTATTCAAGAAGCAGACGGGGAATCATGCCTCATTTGTCTGTTGCAAATGAAGTGTTAACCAATATTTTATTTTTCATACATCTAGATTAGCTTTAAGTGTCTGGGTTGGACTCTATTTCCTAGGGAACATATTTTCCTTTCCTATATATTGACCTTCAAATGATCAAGGTAGGAAAACAATGGTGACAAAGATAAAATATTTTCCTCTTCTTAATTTTGGGAATAACTTAAGGGCTCAGAATGTCAACCTTGCAGGGATGTTTAAGACAACCCCACACATTCAGGCTGATTAGATTTAACGGTACCAAGTGTATATTCAGTGGTAAAGTAAATATTTCTCAAATGCTACCTTCATGGAAGCAAGTAACCAGAGCCTGTCTATTGTACAGTAGGTAAGTTTTTACTCTGGCCAGGAGCTTGGAGCCAAATAGGTTTTGCCAGATGAAATGGAAAGAGCTGTGGTCACTGGAGTTATAGCAGTAAGCACACCACATCTGGTCTTCTCTTGAAATGAAAAGAACGGAACCCAGCCCCCAAATCGCTCACCCAGAAATTATGACTCTTCCATGGAATTTTTCATTGTACTTTTGGTTAAAGCCATGTGACATCCATCCTCAAGAAACACTTTAGCATCAATATTCAAAAAGCAACCTTTTAGCTAGTTTAGTGACAAAAGATACCTGTGGAAGTCACTGCTTTGAGAGTGCTTATCTCTTTAGAGGACTTTGATCTTTAGATAATATAGATAATCCTGGGTAAAAACTCATGTATAATTCTAAAATGAATATTAGTCCTATGTCTGGTCTTAATTGTTATTTTAAACCATCACCAGGAAATTGCACCCAAAACAAATTAATTGGTAAAAAATTGGTCTGGTCAAGTGTTGTTTTTCCGTAACCTGGTGTAAGTGGGAGGAAGCCCTTACATGCCACTACCAGGCAGTTTAAAATCCTGCCATTTCCCAATTCAGTCTAGAGAAGTGTTTGAGATAGAGGACAGCCCGGAGGCCCTCATGCTAAAGAACAAAGGACAAATACAGTCAATACATCCCATAATGCTTACATTTCCTTTGCCTTTTCCCCTTGGTTTTTCCTGGGAAGGACTGACCTGGGCAAAGCACCCAGCTCTCTAAAAGACACTGTATAGACCTTTTAGAAGCGCAAAGTCCAAGGCCGAGGTGAACTTCAGGTCAGCGCGTCTAACAAATATGAAAATGTCGGCTGGTGAGGGCGCGCCTGTGACTTAACAAAGACTGTCAATGTGTAAGATTAATAAGAAACAAAATGCACACGGTGTCACTGTTCGGTCACTTTGAAACTTGGGACAGGGTTGCATTCAAGTGGGAAGGCTGTTCCAAATATATTCAAAATGATTCAAATCAGATTCAAACCAGGCTGCAAACACTGGGTCCTTCTCGCCCTCCCTCTCCCTCAGACTCCCTTCGACTCCATCTGGGATGCAAGGACATGATGAAAAGTTATTTCACTTAATGGGGTTTTAAGATAGCGATTTGGGGAATATATGCTATCCCTGCACATGGAAAGGAACAATTGTGCTTACCAGTTTCCCAAGGAAAAAATAGTGCTTCAACCCCGCTTGGGACTAGAGCCAGTTGGTGTGCGAAGATTAGCAGGCTCCCTCTCTGCTCCATTTCAGGGCATCCCATCCCCAGGCAAGATGCTGCTGTGGTAAACTTTGGCTTGTTTTCCTAATTGAGTTACTTTCTTTCTACCTTTCGTTTGGTGTCTTGGATCTCATGTTGAAGGCAAGAGATGCTTCTTAGGTTTACTGTTTTTTTTCCAAATGATTATTTGATTCCATGGGATTTTTGCTATGGCTTGCTTGCAAAGGGAGGCTGTGGAAGGTTCAGGAAAGGTACTGAGATTGTTTATTACAGCCATAAATCTTGCAGTAAAATGTCAAAATGTCGGTGTGTGAGATAACACTTGGTGGTCCTGGCTCCGTTTGTGTTTATGATAGGAGCTCAAAGACGTGTTACAGGCCTTGGGGGATTGTGTCAGCCCATCCTCCTTAATAGAACCTCAGGAAACAGAGTTAAGTCCTCTAGCTTAACCGTATACAAAACAGTGCCTCCTTAATACTTAAAACGTGGAAACTCTGTAGACCATTCTGAGGCTAAACAACATGGATTTTTGTGTCTTAGACTCTGTAAATAATATTAAACAGACATGGTTAGGACTCCTCCAGTGCTCAGGGTTGGTGACACCAGAAGCAGACTAGATTTCCTCAAGCTTTTCATCCAACCTGAACACATGCAGATATGCAGTGCATGTGTATTTGTATGGTCTGTCTGTGTGCTACTAATGTTAGAGATGTCTCCTGTCTCATTTGTGTACCTATTTTCTTGCTATTTTCTTGCTAGAGAGAGATATCAGTTTAAAGTAGCCACATCAGGCTAGATTTCCTTCCTCCAGTCTAGAGAAGATATCTAGAGATTAGAATCTTTGTTGGTTTCCATCTATGGCTCAGATTTTCATTTAAAAAAAAAATCATGGTGCTTCCTGTCAGTGGACAGCTCTCTTTACCAGCACAGACACCCAGTGTGGAAAATCTCTTTGTACTACTTCAGGATGATTTCAATAAGAAACTAACATGATCCTTTTTTTAACCTCTTTCCCTAAATTACTTTAAAGATTAGTCTCAATAATAGTCTTCATGTGTCTAAGCATTAAATGACTATCTATCAAATAGGATATATCCCAGTATTTAGTAGCTCAAGTGAGTAACAGATATGAATGAAGATAGAATGGATGTTCTTTCTGAAGTGTCTCTAGGCTTGGGTTATAACTTTCCTGGTCTGCGTTTGAGAAGGCCGTTGTTCTATCCTGCTCTCTGAAAAATCAGCAAGGTGCACCAACGGAAACTGCTTTGCATACCCAGAGGAGAGTTATTTTTTAGAATGGCGGTGATAGTTTGCACTGCTTTACCATCATGCAAAGGATCTAGGCGTGTCTGCTATTCAGAAGAAAGAAAGAGCACAATTCCAGGTACGAGTGAGGCATCAGTATTTACTTCAAAGATCAACATTAGGTGGAATTAATAAGTAATTTATTTGTTAATAATAATGGCATAATTAGTTTACCCATCAAATTTCAATTACCAAATGGCAGGCAACAGTCCCTTCTCTCTCCTTTCCAGAGCTACTGATATCGTTAAAATGCTAATTTTTCAGCAATCGCGGGCTGGTCTGTAAATATAGCCCTTGGTTTAGATCCTGCACGAGGAAACAGCATCCAAAAGGAGAAGGGAGGGAAAAGTTAGAAAAGACCGATTGACAATTAGACCAGGCAGGGTCTTATTGTATCTCAAACTTGTTTTTGTTTGGTGATTGTTCTGAAACGCGAAGTTACTGGATTCGAAGCCGGGTTTTGTGCAGGCGTCGTCTCTCTTCCCACTCTGGGGTGGAGGTCTCACAATAGCGCCTAATAAAGGAGGCACATTTAGCTCTCCTCAGCACCTCCATCAACTGCAATATAGGAAGGTTCCAAGTCTTTAAATGAAAAAATAATGTACAAATTCTGCGTCTGAAAGAAAAAAAGTAAAAATAAGTATCCACGAGGTTTTAGTGGATCGCCCTCGCTTGCTGTACTTCCTTGACCCGCTTGTTCAGCGGCCCTTCTACCCATCCTCCCTGTGCAGCTCCAGCCCTGGCTTCGCAAAGCAGGGACTCCCTAACAGCCGGGTGGATGTGTAGGGCGTGGACAAAGAATCAAAGGGCGAGAAAAATGGGTCCGTAGGCCTCCTTCGTTTTATTCCAGAGCTAGGATAAAAAGCCAGGGTCTGCCTCTTGGTCCCAGTGCCCTTCCCTCTCCTGGAGGGCCTCGAACCCTCGGAGGACCACCCGAAGCCTGGTTGGACTGGAGATCGGCGCTGAGTCGTGGCGACCAGCTGCCCAGAGGCCTAGGACAGACGTGGGCAGGAACAGGGCTCGAAAGGACCCGCAGTCTAACAGGCCCCAACTTCTCAGCCGGAACCCAAGTTGGGGGGCCCGAGGAACCCAAGCTCGCTTCTCCCACCCTGAAGGCTAGCAGCATCCATCACGCATCCCCCGCGCGTTTCCTGATCCGGGTCCGCGCGCGCGGATTTCCCATTGGCCGGATCGCAGCACGTGGGGCGCGGGGGCGGGGCGCGCAGGGCCACGGGGAGCGCGCGCGGGCGGGGGAGGAGCGGCGCGGACTTCGGCGGCGGCGACGGCGGGAGGGGGAGGGGCAGTCGTTTGACAGCGGGGGGAGGGGCGGGCGCCGGGGCCGGGGGGGGGGGGGGGGGGGGATGGGAAGCGCGGCGAGAGGGGGAGGGGCCTCGGCGAGCGCAGAAAAACGACACCGCGAGAAAAATTAGTATTTTTGCACTTCACAAATTAATGACCATGAGCTCGTTTTTGATAAACTCCAACTACATCGAGCCCAAGTTCCCTCCTTTCGAGGAGTTCGCCCCGCACGGTGGCCCGGGCGGTGGGGACGGCGCCGTGGGCGGGGGTCCCGGCTACCCGCGGCCCCAGAGCGCCCCGCACCTGCCGGCCCCGAACCCGCACGCGGCCCGCCAGCCCCCCGCTTACTACGCGCCGCGGGCGCGCGAGCCCAGCTACCCCGGGGGCCTGTACCCCGCGCCCGCCGCCGCCTGTCCCTACGCCTGCCGCGGGGCCAGCCCCGCGCGACCCGAGCAGTCCCCGGCCCCCGGCGCGCACCCCAGCCCGGCCCCGCAGCCCCCCGCGCCCCCTCGGCACTGCGCTCCCGGCCCCACCACCCCGGCTGTCGCGACGGGGGGCAGCGCCCCCGCGTGCCCGCTGCTGCTGGCGGACCAGGGCCCGGCGGGCCCGAAGGGCAAGGAGCCGGTGGTGTACCCCTGGATGAAGAAGATCCACGTGAGCGCCGGTATGTGGCGCCGCCGGGAGGGCAGCGGGCGTGGGGGCGCGGGGCAGGGCGCGGGAGGGGACCCCCATCTGGCCGGCGCTTTGGCTGTGGGTGTGTGCGCGCCGCCCGCAGCCTGGTCCTAACGTGAGAACCCTTTTGTACCCAGGGTCCCTTTATCCTGAGATTTACGAGACGCCAAACTGTTAGGGCAGTAATTATAGCCCCCATAAATTTAATTGCCCTGGCAGAGGCTCCCGGCCATGTGTCTTTGAAGCTTTTCTTCAGCCCCAAAGCCCAGCACCATTCTTTATGGCTCTCGGGTGTTTCCCGTTGTCAATAGCCTGTGAAACATTTTCTTTGCCTTTTTATGTATCTTGTGTGAACTTGGTGTCAGGTTATTATATAATGATGATGTCCGATTGCTCTTCCCCACCCTATCTCCTCTCTCCTCCCCTCCTCCTCTTCTACTTCTTCCTCTTTGGCCTTCTCTTTCGGGGTTCTGGTGTTCAGTCAACTCCAGTTATAACGGAGGCGAACCTAAGCGCTCTCGAACCGCCTATACCCGGCAGCAAGTCTTGGAACTGGAGAAGGAATTCCACTTTAACCGCTACCTGACCCGGCGGCGCCGCATCGAGATCGCCCACACGCTCTGCTTGTCGGAGCGCCAGGTCAAGATCTGGTTTCAGAACCGGAGAATGAAGTGGAAGAAAGACCACAAACTTCCCAACACCAAGATGCGATCTTCCAACACTGCCTCGGCCCCTGCCGGCCCGCCTGGGAAAGCACAAACTCACAGCCCACACCCCCATCCCCACCCTCTCCCTGGTGCTTCCACACCCATTCCCTCCTCCATATAATCTAGAGACCTGGATCAGTTTCTCTCACTTATGTGCCCTACTCATCTCCTGCTCCTGTCCTCATCTGCTCTTCCCTAAGTAAACCCGAGACACCAAAACAAAATCCAACTTGCTGGAAACCATAACCAAAAAGAAGACATTATCCCTGGTTGGTGTGACCCCTCCAAGAGGACGTCTGTCCTCGTCCTCGTTACTGCTTAGTGGAACAACCTGCTGACCTGGACAACTTTGCCAGGATTGGACACCTGTAAGAAAGCACTGGCCATCGACTACCTTTGAGTCAGCCAGACAGCACGTGCTGACTGGGGACATGTACTTGTATGCAGAAGAAGCAGGCCGGTTCCCAGCTTCCCAGCTTTCTAACCTTCCTTCCTCTTCTGCGTTAAGGCAGCTCACATGAGCTTTACTGAGTAGACTTTGTGGACCTCACCAGATTATTTAATTTTCAAAGTGTGTAGACCTTGATGGTAGGTGTGGCATGTAGTTTCCTCTCCTTGCATTTATTTAAGATACTGTTAGAGAGATATTGTTGTCTTATACTGGGGCACAGCGTTGGGGAGAGGGAAATGCATTTAGACTCACTTACAACTGTACAGAGAGATATGGTTGTATAAAGAGGAATGTGCTAAGAATAAACTTCAGTTTATAAGACATTAAAAACCTAAGAGACAGATTTGTGTGTGTTCTAAGCTTAAAAACCAAACCAAACCAAACTACCCCAAGCCTCCTCTTGGTTGAGATACTTGACCTAGTGCGCAGAAGCCTTGTAGACAGGGTGAGCTGGGGTCACATTCTAAGCACACTCACAATGTGTGTGTGTGTGTGTGTGTGTGTGTTTAACTTGGTCTGAATTCTTGCCAAGCTTGACCCACTGTGGAAGTGTTCCAAAAAGCGGGAAGGCTCTTGAGCCCTGAGAGGGCTCCTCTTCTTCCCAAACTTGGCCAGGCTTTCAGGCTTCAAGTCTCTGTAAGGCATAGAACCGTGTGTGTCCCTGCAGTGAAAGGTGAGACCTTGCAGAGCAGAGGCCTGGAGCTTCTGCAGCTGTTCTGTAGGCTGAACTCTGAGCACACTTGGAAACAGGCATTCCCTTGGCGTTTGCTGCACCTTCACACTTCATCTGCCTGTTTCCCTGGAGATAAAAAATAGTTTATGCAAAGGGTTGCGCTTGCCTTTTGGTTTTTGGCTGGTCTTAAGGTCTTTGCGCTGAGCACAGCTTGGGAATTTTTTGTTTGCTTCTCTGAGAAGAGCTTATAGAGTAAAGTGAACTTTCCCACCACACTCTCCAAAGCACCCTAGGAGGAAATCAGAAGCGTAATGATACCCTAAAATGCACCCTACCCCTACACAAGGTAGGTCTGGAAGAATTCACTGTTGGAAGGAAGCCAGACTAATCTGGGCCACTTTCCTCAAATGCTCTGTGGTGTTACTGTGCACTCCCAGAGAGCCAGATCTTTGAAAACATGAAAACTCATCTCTCAATCTCTGTAACTCTAGTATTTGTGCAATGGTTGAAATTTGATGCTCAGGCATCACACACACACACACACACACACACACACACACACACACACACACTGAATATGTACCTGGCCTTGAAACAGAGCAGTTTGGGGGATTTTATAGTAAATGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGTTTATCTAACTCTGTAATGTTAGAAGAGATTTAAAACCATTTTCATTAGTGGGACAAGCTCAGCCACCCATGCTTCAGACCAGGGAAATTTTTCTCTACCCATAGATAATCCAGTTTTTAGAAAGAAGCAATGGGCTCTAGTCTCTGAGAGGCCAAGAAAATTCATGGGGAAGGAGTACACACCCCTTCCCAAGCCAGGAAGGACCAGGCATAAAGTGTGCTTTGTAAGGTGTGAACAGGAGCTAAGCATTTCTGGAGGCAATGTAGCTGCTGCTACAACTTATTAGCCCCCCCCCCACACACACACACTACATGCACTTGTAAAGCAAAATTAAATCACACTGAAAATAGCAATTTCCCCGGGAATCATTAATCACCTCATACAATAAATACTTCTTTGTAATTCAACAGCAATTCTGAAAGGCATTCTCTGGGAAAAGTCTTTGGAGGAGGGGGGGGGATAATGTAAATAATGCTTTCTCTCAGGCAAATAGGCAACATTTTGGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCACTCAGTGGAAATTGAGTATCAAGCCACAAAACCTCAATATTTTTTCAACTCAGATTTTCATCACATAAGGTAAATTCTTATATTTCTCCTCAGTGGGGAAGGACGGATCTGAAAGGCTTCCTGGAGATCATGGTAGGTAGGACATCTTTCATTTGTGCATTCAGAAAAGGAAGAGAGAGTCAAAACAGCTTTTTTTTTCTGCTGATTTGGGATAAAGTAGCATTTTTTTGTATTGACAATTGATAGTATTGGTGTTTTGTAAAACCAGGATTACTGAAAATGCTACAAATGATCTCTTCGTGGTAGGTATTCTATTTGTGATTCAGCCTTTAAGGGAGCTTGCTGTAACAGCTTAGAAAATCTCACTGTGCATCCCTAAAATCATTCATTGTCTGCCCTTTGTCAGGCTAACCATAAGAGTTCACCGAGAGGACAAATTTTCTATCTCATTAATTGTTTTTTTTTTTAAAGCAAACCTACTAGTCCTTCAAACCCTTGACCTTTAAAAACAGTATTTTGAGTAAGCTGCACCGTTCTCTTACCAAAACGACCCCTGCACGGATGCTCTTCTGTTCTCTTCCCTTTACTTCCCATCCCCCCTCAGTACACACTTATCCGATTTAGTCACAGAGCCAAGCTGTGCATGACTCTGGAGAGAAAAGTTTTGTCAACATCTGAAATCAACCTAAATCGGATAAGAGACACTTTAATGGTCACAGTTTGAATTAAGTACTTAACACTCTCCCCCTTGAAGAAAAATGTCAGTTTGCAGGCGTTCTTTGCTAGTTTTGCTGAAATCTACGATATACCTGGTGTTTTATTACAGCAGGAATTCATCTGTGACAGGCATAGTGGAGTACTTAATACCCAGGATGGAGCTCATGGGAAGATTACTCAGATATATGGGTGGGCCCATTCACACCGACTCTGTCTTTATACCAGCAATCCCGGGGTGCCCTAGTCCCTCTCCTTCTTCCCCTTCTCCTTCTTCCCCTTCTCCCACATCTCCTGGGCACCTCTGTTCCCCTAAGCTCTCACACTGTGTCACTGTCCCCTGCTGCTTTCCCTCCAGCAGTTCCAGCAGAGAAACAGATCAGCAACAGCAGCAGCCCTTTAGAGTGGAAGGAGACATCTCAAAGAATAAATGTAGCAAAGAACAACTTCCAACTTCCCATCCCTGTGAGTGGGTTCTCTAGAAGCAAAGACCTTCACTATCATTCTATTGATGTCTGCTTATATAAATGCACACATACACACACCTGCAAGGAAGAACTCAGGCTCAGCTTTTCCCAATGGCTGTTTCTGGTATCCCCTTTCCTATATTATACATTGGATCAAGTAAAACAAAACAAAACTGTTTTGCACCACCAAGAGGATGGAATGTGCCCAGTCAGTGGTGGTGCACACCTTTAATCCCATTATTTGACAGGCAGAGGCAGGTGGATCTTTGAGGTCGAGGCCAGCCTGGTCTATAGAACAAGTTCCAGGACAGCCAGGGTGACATGGAGAAACCCTGTTTTGAAAAAACAAACACAAAGAAGCAAACAACAACAACAACAACAATAAAGAGGGTGGTATGAAAAATCAGAGGAGGGGAAGGAGGAAGACATGGGATAGTACTAGGAGGTGTCAGGAAACCTTCTAGCCTGTAGCTTCTACCTTGGAACTTCTAATTTGAAGGGGACTTTAAGTGTTCAAATTGAAAGGAGACCATTTTGCTTCAAGTGTCTCAGTTCACAAGCAAGGACACTGAAGCAGTTGAATGGCTCTTAAAGTTCCCCCATGATAGTGAGCATGTAGGGCATAGAGCCTTTGCCATCACTCTGAATGAACAGAAGTGCATAGGCATCTTCCTGCTGAAGGAGTTATTCTGTTTTCGTTGGTGATAAACAAGAATAGAAGGCTGGGCATATAGATATCTCTCTAGGCTTTTGCTGATGTGTAGGGCCACACAGGTGTGTGTATAGTCTGAAAGAAGAATGCATGTATCACTAAGGCTGCCTTGTGAGAATATATAACTAACTCTCTCCACCCCCTAGTCTTGGCACTCAAGCAGGTGTCTTGACCCCTGGGTTCAGGTGAGGGATGTCTGGTACTTTGCCGGGCTAGTAGCATGACTGCTATGCTCAACCTAGCACTTCCATGCTGTTCCCTTTTAGGGAAAGGGTGGTTGTGTTCTGGAGGCCTGGAGGGGTGGGGGGGGGGAAGCCAAGTATGGGCTTTGGTTGCAGCTGACAAAGGTGTAGCGCCTGTCAGAATAGAGGGAGATATTGAAATTGTGATCTCTTGTGGTCATGTGACTCGTTAAATAATTAATGCAGATCATCAGGAGTGGATCTGAGTCGTCAGGGCCGCACTTCTAGGAACGAATCTCTCAGTAGTGAGACTCCAACTTCCTATTTGATTTTTAAATACACACACCTTCAGATTTATCTCCAAAAGCGTTTAACTCCTTCGGGCAAGAGCCCTTCCACGTGGAGAACAGAATGCCGGGTCAAAGGCTTTCTTGCAAGGCTGCTGGGAGTCCAGGGAGGCTGTGTCCAGGGAAATGTGAGTTCCGGCTCAGACTTTTTTTTTTTTTTCCGGTCATATCCTGGTTTTGGTGATGAAGTGGGACAGAAGCGCAGACAGTTGGTAATGTTCTGATTCACGCTGGGGAAGGCTTCAGAGATACCACAGGAGGAGCACGCGGCTTTGTTCAATTTTTCCCGGCGTTCATAAATCACCAGCGCTAGGCGAGCGAGGGAGCAAGTAGACGCCAAAAAAAAAAAAAACGCGGAGAGAGGCCACAACAACGGCTGCAGCCATTGCAGAGCAAGAGACTCGAGCAGCGTCTCTCTGTGACTCATTAGTCTGAAGGATTTATGGGAAACAGGAATCATGAATATTAGACTTGAGAATAAAAAAGATAGCAACAACAATAATAACCATAATAATTACAATGCTCCTAAGCCTTGTGCTTGTGATGGTGGTGGTGGAGGAGGAGTAGGAGGAAGAGGAGGAGGGGGTAAGAGGAGGGGGAGGGGGTGAGAACCGGGGCACAGATCTTTCTGGGATGAAGTTGAGTAGCCAAGTAAGTAGCAGCTAGACCCCACCTTGATCAGGATGGCACCAGGAGTCTCAAGACCAGGGGGCTCTCCCCTGGAAAAGTAGGAGTTTGACAAAACAAAGGGGCCCAGCGAGGATGCTGGCTGGCCCTAAGCACCCTTGTGCAGGGCAAAGGCTGCGGGTGGAGTTGTGGCAGAAGGCAGCTGCCAGTTTGCTGCTACCCCCTCAGCGGTCTAGGAGGCTCCCAAGCCAAGAGTCAGGCAACTCCCTAGCTTCTTGGTGGTTCTTTGCTGGCTGCCAGCCGGATTGCATAGGGGTAGGATAAACCTACACAGGGCTGGTTTGGAGCAGGTTGGCAAATGGCGAGTGAGTAGTTTAGGGTCAGGGCTATAGAAGCAAAAGTCCTGCACAGGACTAACAAGCAGAGGACTAACAAGCTGGTACCATTCTCTGCCATTTCCTGATGTCAAAAAGCTATTTGGAGGCACCTTGGCCATTTCCTGGTTAGCAGGCAAGGAGGTGTTAAAGTGGGGAGGCATGAGGCTGGGGGTGGGTGGGGGCTTGCACAGGTATGGCTGGTATTTATTGTCCAGCACTTTGGTCTTGCTTGGTTTCTAGAAACAGTAGTTGTTCCGGTTTTAGTGACTGGGCACTGTTTTAGTCCTGCAAGCCCACCAGGACCAAGAAATAGCTTGCCCCAGCAATTGGGTAAATCAGAGGACAAAACCTCCCAATACTGCCTCCGATCTGTGGGGCTGAGCAGGGGTCTGATTTCCCGCCAACAGAAATGAACACTATTAGTGGGGTTTCAGCACAGTCTGATTGAATGCTTCCAGACAAGGCTTTCCATTGTTTGCAAAAGAAAATAAAGCTTGTGTTCACATTCCCCAAGCTGGGGTACATCCAGAGCTCAGCCACTGGATCCAGCATCACCAGCAAAGCTGCCTTCTTCTTCCCTCCCTCTGATTCATCCCCCCCACCCCCCAAAAGCTATACAAAAGGAAACTAAGATTGTGGGTGCAGAGATGAAGTATGTATTTGTTTTACAAAAATAAATCACCATCTTCGGGCCATTTGTAGACTGGAATATTTCGAGCTATGAGTGTGTCTCATGGACCAGTGCCCTGGCGACAACTCCATGTCCGCGTCACCCTGGGGCCACCCTGGCGCCCACACAGGACACGTTTCTAGCTCCAGTCTTCACTCCCTTCCTTCACAGCCACTATTCACCCTCTGGTGTTTATTTCTCTGCAG
Seq C2 exon
AGTGCCTGGACACTGGAAAAAAAGATTCCCTGAGCACCTGGAACTGGAGACCATTCCTGGTTCAGATTTAAACATCTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059723-Hoxa3:NM_010452:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF062616=LktC=PD(66.0=93.0)

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000098943





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000071511, ENSMUSP00000126935
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:27122643-27140082 
HsaINT1029701
Human
(hg19)
chr7:27162262-27166504 
ALTERNATIVE
HsaINT0077280
(HOXA3)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr4:69357230-69374672 
Chicken
(galGal4)
chr2:32932219-32934864 
Chicken
(galGal3)
chr2:32539978-32556467 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"