MmuINT0084108 @ mm9
Intron Retention
Gene
ENSMUSG00000000157 | Itgb2l
Description
integrin beta 2-like [Source:MGI Symbol;Acc:MGI:1277979]
Coordinates
chr16:96647656-96648580:-
Coord C1 exon
chr16:96648336-96648580
Coord A exon
chr16:96647876-96648335
Coord C2 exon
chr16:96647656-96647875
Length
460 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAACCCCGGTTGTTTTCCAGAAA
3' ss Score
7.67
Exon sequences
Seq C1 exon
GTGCAACTCTGGCTACGCTGGGAAAAACTGTGAGTGCCAGACACAGGGCCCGAGCAGCCAGGATCTGGAGGGAAGCTGCCGGAAGGACAATAGTTCCATCATGTGCTCGGGGCTGGGAGACTGTATCTGTGGGCAGTGTGAGTGCCACACCAGTGACATCCCCAACAAAGAGATCTATGGGCAATACTGCGAGTGCAACAATGTCAACTGTGAGAGATATGATGGCCAAGTCTGCGGTGGCCCAG
Seq A exon
GTGAGTGACAAGGGCCACTGGAGGTGGAGACTTTCTTGTCAGTTTGCACGAGAGGACAATGAGTGTAACAGCAAGACAGACAGGTGGACAGATGAGTGTTAGACTTACTAAGCCACACAGAAGCAGCAAGCCTAAGTGGGTACTTCATCTCTGTGAAGGTCAGGCATCGTCCTAGGAGGGTAACAGGTAACAGTCCTGACTCAAGAGCTATTTAGACACGATAGGGGGGCCCAGTCTGGATGAAAGGTGGCTGTGTTGCTAGAGAGGTGGGGGGGGTGTCTCCCTGGTCTCTGTATCTTTGCCCATCTATCCTTGCAAGGTGTTGTGGGATCATATGAGGAGATACAGGTATAAGCAGGCAGCAGAGGATACAGCAAGGGCCCAGGGTGGTGGGAAAATGATTTCTGATTCCTACCTGCCTTCAGGAAGATGAGTCCTGGCAACCCCGGTTGTTTTCCAG
Seq C2 exon
AAAGAGGCCACTGCTCCTGTGGCCGATGCTTTTGTCGTTACGGCTTCGTGGGCTCAGCCTGCCAGTGCCGGATGTCCACTTCAGGCTGTCTGAACAACAGGATGGTGGAGTGCAGTGGCCATGGTCGATGCTACTGTAACAGATGCCTCTGTGACCCGGGCTACCAGCCACCACTGTGTGAGAAGCGTCCTGGCTATTTCCATCGCTGCTCCGAGTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000157-Itgb2l:NM_008405:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(76.9=12.0),PF079748=EGF_2=WD(100=45.8)
A:
NA
C2:
PF079748=EGF_2=WD(100=41.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGGAGACTGTATCTGT
R:
AGCAGCGATGGAAATAGCCAG
Band lengths:
346-806
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: