MmuINT0084111 @ mm10
Intron Retention
Gene
ENSMUSG00000000157 | Itgb2l
Description
integrin beta 2-like [Source:MGI Symbol;Acc:MGI:1277979]
Coordinates
chr16:96422288-96423118:-
Coord C1 exon
chr16:96422957-96423118
Coord A exon
chr16:96422689-96422956
Coord C2 exon
chr16:96422288-96422688
Length
268 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
GTTTGTTTTCTCCCTGGAAGAGC
3' ss Score
4.5
Exon sequences
Seq C1 exon
TGTGTGCAGAAATCTCCAATACCACCATCCTACTGGGCGTTATAGTGGGCGTCTTGCTGGCTGTTATCTTCCTGCTGGTTTACTGTATGGTTTACCTGAAGGGAACCCAGAAGGCTGCCAAGCTCCCCAGAAAGGGTGGGGCTCAAAGCACACTGGCACAGC
Seq A exon
GTAAGTGGCTAGGCTGTGTGAGCCTACACCTTCCTGCCCTTTGTGACTTCTCACACTGTGGGTTGTGGCTGTTTCTGAAGTTCTGCATACACCCTGCCCCAGCAGCTCAGCTGAGTGTGCATACTATGAAATCTCTACCCTTAATATCTAATACCTTCCACTTCTGTCTTGGTCCTCAAAGTAACGTCTTTAAACTGGACATCCCCAGAAGGCAGCCCCAGAAGCCCTCCCTGTACTAACAAGGACATGTTTGTTTTCTCCCTGGAAG
Seq C2 exon
AGCCTCATTTCCAAGAACCCCACCATGTGGAGCCAGTGTGGAATCAAGAGAGACAGGGTACCCAATGAAGGTGAGGCACCAAGACCAACTGGATGGGACCAGCAAACCATGCTTCCTCCACCCTATGACCAATCAGGACATGACTTACACTCACCACAGAAGCAGCAGCACAACAAAAGGTGTTATAGTATTTCTTTCCACAATGGCCAACCTGCCAGGTCTTCTGTGGACTTCTTTCTAGGGACAGCATCTCTAGGGACAGCATCCCTTTCTGGCCCATGCAGTCATTCATAAAGCTTGAGAAAGAAACTTCCTAAGTCTTAGAAGTTCAGACACATGTTTTTCTGTGTAAAAATTAAGAAACAAGTTCAATTAAATGTAGCGATAATTTATATGTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000157:ENSMUST00000000161:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTTGCTGGCTGTTATCT
R:
CACCTTTTGTTGTGCTGCTGC
Band lengths:
296-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types