MmuINT0084455 @ mm9
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108421017-108423654:+
Coord C1 exon
chr6:108421017-108421197
Coord A exon
chr6:108421198-108423400
Coord C2 exon
chr6:108423401-108423654
Length
2203 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
ATCACAAGTTTGCCTTTTAGCCA
3' ss Score
3.71
Exon sequences
Seq C1 exon
CACTCGTTTTTCTGCCGGCTGACAGAAGATAAGAAATCAGAGAAGTTCTTCAAGGTTTTTTACGATCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCGACAGTGACAGTGAACACCAGCGACTTGGGAAACAAAAAGAAAGATGATGAAGTGGACAGGGATGCCCCGTCTCGGAAGAAAG
Seq A exon
GTAATATGCTCTGGCCCATCGGACTGGAGCTCACAGAGGAGCCCTGTGCTATATTGCATGCTTTTCATGGCTTCCAGGTTCCAACAGGCCTTCTGAGCAGGGCCTTTAGAAGAAAGCTACCATTGTGGTTATGCCATCCTCTCAAGTGGCCAGGACAAAGCCCTGCCACCTAGGAAGGTCTTCCTGCTTTAATAAATTCATAAATATTCTTATGCATGCACAGTTCTAATTAGTATGGGTGGCATTAGCTACTTTTCTTATTTCTGTGGCAAAGGACCTGACACAAACAACCTAAGACAAACCAGGCTTATGCAGAGCAGGCTTCGAGGTTGTAGTTGTCACGGAGGGAAGGCCTGGCGGCAGGGATGTGAAGCAACTGATCACACTGCATCCCCAGTCTGCAAGCAGAGTGGATTCTCGGCTCCTTCTCATTCAAGTCTCAGCACCAGCTGAGGAAATGGTGCCACTCACATTCGGGGTTATTCTTCATACATCAGTTAACCTCATCAAGAAACTCCCTCAGAGATAAGCGCAACGTTGTGTTTCTGTGGCAACACTAAATCGCATCAAGTTGGCATTCGAAATTAAGATCCATGAATTGTTTGGGTTTTGTTTTTGTTTTACTGTGTTTTTCTGATTATTGTTAGAGAACATTGAGAAAATATGGACTTTTAGAAATCTTGTCTGTCCGTGTCAGGTGACTTTAGTTTCCAAACTGCAAACTTTTCCTCTATAATCTCCCTTCAAAACCAAAAGAAAAGTACTGGTGGTGAAGGGGTGAGTTTAGGAGTCACACAGCCTTGAGCAAATTAATTAACCACACTGAACTCAACTTCCCAAGGTTAGTGCTAGATTTGTCAATCAAGTAACTGTTGACATTTGGAAAATGTTCCTTGCAGAGGCTATAGGATATTGAGCAATATTTGTGACCTTTAGCTTGTTAGATGCCACTCACACACCCATATGCCCAACCGAAAATGTCTCCAGGTATTTCCACTTCGCTGCTGGGGAAAGTTAGGGAGAAAAAAAAAAAAAAAAACCACTTTCACTACTGTCTGAGAACCACTAGTCTAGAAGGGAGTATAAAGAGAAGGAGAGAAAAATAAACCTGCCAAGTCCCGCTGAGTACTGAATATGAACCAGGTGTACGTTAGCCATCTTTCTGTTGCAGTAATAAATACCTGAGGTATATAAACCAAGGACCAGGGAATTTCTGTCTGAGTTCAGACTAATTGAGGTTTCAGTCTAGTTGCTTTGGGACCCACCTTGGAGCAGCACATACCTACTAGAGCAGAGAGCAGAGGGTAAAACTGTTCACCTCACGGCAGAGAATCAGAAGAAACCAGAACAGACAATGTCCCACAATCCCTTTAGGGAAACACCCCTCCTACTAACTTATGACCTCCCACCAAGTCCCACCTCTTAAAGGTTCTATTCATTCCCATACCACTAAAGGCTGGGGCCCAAACCTTTCACATATGGGCCTTTGAAAGACGTTCCTAAATCCAAATTGTAAGCAGCTATTGTTCAAAGTTCTTTACCTATCTGTGTCAATTTATGTAAACCTCAAGTTAACCCTGTACTTAGATAAAATGGCTATCTCTATTTTACAGATAAGGAAACTGAGGCACAGATATAGTAGTAGGCCACTGAGCCAGCCTTAGAGCCCATGCTGTCGATACCCCCCAGCCCCACCTATGATGCCGTAGTTATCCCATGGGGCTATTCTTCAGAAAAGATAAGATAATACACACAGAGTGCTTACTCATGATATCTTGGCACTTGGCAAGGGGTCAATTGTTGTCCTTCCAGTAACAGTAATTGCTGTTGTCATTAGCATTACATCAAGCCTCTCAGGAGCCTTCTGGAAATCACTGATGTGCTCACATTTTATGGAGGAAGAAGCTGAGGCTCGGAGCCACAGATTATGGGGTCAGCAGAGCCTGCACTAAGGCGTTTTGCTCTATAGCATAGCACAGACCTCAGTGATGTGTCAAAAGCATTATGGAATTAGCAAGGCTGGGCTCTACATTCCGCCTATCAAGAGACTGAGAGAGGAGATGGTGGCTTTCTGGATTGTTTTTTCCAAGTGTACAGATCTCTCACAAAGGCGGGAATCTGGGCTTCTGGCTGGTATATAAGATATAGAAAATAGAACTTCTGAGGATGTAGCAGTATTAACTATCACAAGTTTGCCTTTTAG
Seq C2 exon
CCAAAGAGCCCACAACACAGATAACAGAAGAGGTCCGGGATCAGCTCCTGGAAGCATCTGCTGCCACCAGGAAAGCCTTTACCACCTTCCGGAGGGAGGCCGACCCTGATGACCATTACCAGTCTGGGGAGGGCACCCAGGCTACAACCGACAAAGCCAAGGATGACCTAGAGATGAGCGCTGTCATCACCATCATGCAGCCTATCCTGCGCTTCCTGCAGCTGCTGTGTGAAAACCACAACCGAGATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-Itpr1:NM_010585:45
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(24.2=34.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: