RnoINT0076660 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140503164-140505698:+
Coord C1 exon
chr4:140503164-140503344
Coord A exon
chr4:140503345-140505444
Coord C2 exon
chr4:140505445-140505698
Length
2100 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
GTCACGGGTTTGCCTTTTAGCCA
3' ss Score
5.99
Exon sequences
Seq C1 exon
CACTCATTTTTCTGCCGGCTGACGGAAGATAAGAAATCAGAGAAGTTCTTCAAGGTCTTTTACGATCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCGACAGTGACCGTGAACACCAGCGATTTGGGAAACAAAAAGAAAGATGATGAAGTGGACCGGGATGCCCCATCCCGGAAGAAAG
Seq A exon
GTAATAAGCTTTGGTCCACTGGACTGAAGCTTGCAGAGAAGCCTGGTGCTGTGCTGCATGCTTCTCATGACTTCCTGGTTCCAACATGCCTTCTAACACTAACACTGAACAGGGCTTTTAGTGTTAGTTTCTGAACACTCTGGCTATCATGGACTCCTTCCAGGTGGCCAAGACCTGGGAAAGTGTTGCTGCTTAATAAGGTCATGATTATTCTTATTTATGCACAGCTCTAGTTAGTATGGGCTGCACTGCTACTTTGTTATTTCTGTAGCAAAGGACCTGACACAAACAACCTAAGACAGACCAGGTTTGGTGCAGGTTCTAGTCCATCACGGAGGGAAGGCCTGGCGGCAGGGGTGAAGCAGCCGGTCACATCGCATCCACAGAGCATGATGAGTGGGTGCTCAGCTCCTTCTCATTCAGTTCTCAGCCCCAGCCAAGGAAGTGGTACCACTCTCATCTAGGATAGTTCGTACATCAGTTAACCTCATCAAGAAACTCCCTCACAGGCAAGCTCAAAGGTGTGTTTCCATGGCAACACGAAATCTCATCGAGTTGCGAATCACAATTAAGATCCATGAGTGTTTTGTTTTGTTTTGTTTTAACTGTGTTTTTCTGATTATTGTTAGGAACATTGAGAAAATACATACTTTTAGAAATCTTCTCTTCCTGTGTCAGGTGACTTTAGTTTCCATCAAAACAGAAAGAAAAGTGCCAGGGGTGAATGGGTAAGTTTAGGAGTCAGACAGCCCTGAGCAAATTAATTAACCACTCTGACCTCAACTTCCCAAGGTAGTACTGGATTTGTCAATCAAGTAACTGTTGACATTTGGAGAATGTTTTTTGCAGAGGCTATAGGATGTTGAGCAATACTTGTGACCTTTAGCTTGTTAGATACCATTCACACACCCATGGGCCTAACCAAAAATGTCTCCAGGAATTTCCACTTAGCTGCCGGAGAAAGTTAGGGACAAAAGAAAAAGAAATCACCACTTTCACCACTGTTTGAGAACCACCAGTATACATGGGGGTATAAAGAGAAGAAGGAGGGGAAAAAACCCTACCAAGTCCTGCTGAGTTCTGAATATGAGCCGGTGTATGCTAGCTATCTTTCCGTTGCTCTAACAAGTACCTGAGGTGTGTAAGCCCAGGACCATAGAATTTCTATCTGAGCTCAGAGTGATTGAGGTTTCAGTCCGGTTGCTATGGGACCTGTGTTGGAGCAGCCCATACCTAGTAGAGCAGATAGCAGAGGGTAAAACTGTTCACCTCATGGCAGAGAATCAGAAGAAACCAGAACAAAGTCCCACAATCCCTTTCAGGGACACACCCCTCCTACTAACCTATGACCTCCCACCAAGCCCCACCTCTTAAAGATTGTATCCATTCCCATACCACTAAAGATGTTCCTAGATCTGAATTGTAAGCAGGTATTGTTCAAAGTTCTTTACCTATCTGTGTCAATTCATGTAAACCTCAAGTTGATCCTGTTCTTAGATTTATCTAAAATAGAGATTTATATAAAACAGAGATAGCCATTAAAATGGCTATCTCCATTTTACAGATAAGGAAACTGAGGCACTGATATAGTAGTACGCCACTCAGCCAGCATCAGAGCCCATAGGATTATTCTTCAGAAAAGATAAGATAACACAGAGTGCTTACGGATGGTACCATGGCACTTGGCAAGGGGTCAATTGTTGTCCTTCCTGTAACAGTAATTGTTGTTGTCATTAGCATTACATCAAGCCTCTCAGGAGCCCTCTAGAAGTCACTGATGTGTTCACATTTTATGGAGGAAGAAGCTGAGGCTCAGAGCCACAGGTTATGGGGTCAGCAGAGCCCGTCCTAAGGTTTTCCACTCCATAGCATAGCACAAGCCCAATGACGTGTTGAAAGCACTATGGAGTTAGCAAGGCTAAGCTCCACATTCCACCTATCTAGAGACTGAGAGGAGATGGTCGTTTCCTGGATCGTTTTTGCCAAGTGTACAGATCCCTCACAAATGCAGGAACCTGCGCTTCTGCCTGGTATATAGAATTTAGTAAATGGAACTTCTGAGGATGTAGCAGTATTGACTGTCACGGGTTTGCCTTTTAG
Seq C2 exon
CCAAAGAGCCCACAACACAGATAACAGAAGAGGTCCGGGATCAGCTCTTGGAAGCATCTGCTGCCACCAGAAAAGCCTTTACCACCTTCCGGAGGGAGGCCGACCCTGATGACCATTACCAATCTGGGGAGGGCACCCAGGCTACAACGGACAAAGCCAAGGATGACCTAGAGATGAGTGCAGTCATCACCATCATGCAGCCTATCCTGCGCTTCCTGCAGCTCCTGTGTGAAAACCACAACCGCGATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(24.2=34.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]