MmuINT0084544 @ mm10
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27097962-27098458:+
Coord C1 exon
chr17:27097962-27098213
Coord A exon
chr17:27098214-27098313
Coord C2 exon
chr17:27098314-27098458
Length
100 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
3' ss Seq
CCTCCTGCTTCCATTTTTAGCTA
3' ss Score
10.5
Exon sequences
Seq C1 exon
GTACCAGTTGAAGCTGTTTGCCCGCATGTGCCTGGACCGCCAGTACTTGGCCATTGATGAGATCTCCAAGCAGCTGGGTGTCGAGCTGCTTTTCCTGTGCATGGCTGACGAGATGCTGCCCTTTGACCTCCGCGCCTCATTCTGCCATCTGATGCTACATGTGCACGTGGACCGCGACCCTCAGGAGCTGGTGACCCCTGTCAAGTTTGCCCGCCTCTGGACAGAGATCCCCACGGCCATCACCATTAAAGA
Seq A exon
GTGAGAGTCTGGAGGGTGGGAGGCTAGTCAATGTGGGGCGGGGGTGGGGTGGGGCGGGGCGGGGCATGGGGACCCTCATGCCTCCTGCTTCCATTTTTAG
Seq C2 exon
CTATGATTCCAATCTCAACGCGTCGAGAGATGACAAAAAAAACAAGTTTGCCAGCACCATGGAGTTCGTAGAAGATTACCTCAACAACGTGGTCAGCGAGGCCGTGCCCTTTGCCAACGACGAGAAGAACATACTCACCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644:ENSMUST00000049308:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGAGCTGCTTTTCCTGTG
R:
CTACGAACTCCATGGTGCTGG
Band lengths:
245-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types