RnoINT0076737 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5686627-5687112:+
Coord C1 exon
chr20:5686627-5686878
Coord A exon
chr20:5686879-5686967
Coord C2 exon
chr20:5686968-5687112
Length
89 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
3' ss Seq
CCTCCTGCTTCCATCCTTAGCTA
3' ss Score
8.65
Exon sequences
Seq C1 exon
GTACCAGTTGAAGCTGTTTGCCCGCATGTGCCTAGACCGCCAGTACCTGGCCATCGACGAGATCTCCAAGCAACTGGGTGTGGAGCTGCTTTTCCTATGCATGGCGGACGAGATGCTGCCCTTTGACCTCCGCGCCTCATTCTGCCACCTGATGCTACATGTGCACGTGGACCGTGACCCCCAGGAGCTGGTGACCCCTGTCAAGTTTGCCCGCCTCTGGACAGAGATCCCCACGGCCATCACCATCAAAGA
Seq A exon
GTGAGAGTCTGGAGGGAGGCTGGCTACTCAGGGCACGGTGGGGCGGGGAGGGGCGCGGGGACCCTCAAGCCTCCTGCTTCCATCCTTAG
Seq C2 exon
CTATGATTCCAATCTCAACGCCTCCCGAGATGACAAGAAAAACAAGTTTGCCAGCACCATGGAGTTCGTGGAGGATTACCTTAACAACGTGGTCGGCGAGGCCGTGCCCTTTGCCAACGATGAGAAGAACATACTGACCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTACATGTGCACGTGGA
R:
ATCCTCCACGAACTCCATGGT
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]