MmuINT0085591 @ mm9
Intron Retention
Gene
ENSMUSG00000042529 | Kcnj12
Description
potassium inwardly-rectifying channel, subfamily J, member 12 [Source:MGI Symbol;Acc:MGI:108495]
Coordinates
chr11:60879306-60880452:+
Coord C1 exon
chr11:60879306-60879479
Coord A exon
chr11:60879480-60880167
Coord C2 exon
chr11:60880168-60880452
Length
688 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TGTGATTCTGTTCCCTGCAGGCC
3' ss Score
11.32
Exon sequences
Seq C1 exon
AGCCAGTGCTCCAGGCTTACTGGATGCTGAGGGGCTGTGCCTGCAGATGCCAGGACAAGAAGCTGATCTGTCTGTAGGTCCAGGACAGGTCATTTCTTCCTGTGGAGTCTGTGCCCACTGTGCCTGGATTTGTTTTGAGTGCCATCCAGTTGCGACTCTCCTTGTCTAGTTCAG
Seq A exon
GTACTGTACTCCACGGAGTTACCTGTTCCCTCCTGGCAATGCCCAGAGCTCCCACGGGCCAGCCTGGGCCTTGCTAACATGGTTCTTGCTGTTGGCTTAAGCATTGCTTTCTCCTTTAGCCTCAGCTTCCCCACCTATGAAAAAGGGGTGCTGGACTCTTTTCTTACTTAGACCTCTTCAAATGAAACAAATCCTCATTCCTTTTCTTCCCAAGTCTCTGCACAAACCATTGATCAACAGCTTGCCAGCCTGCCAGCCCCTGGCTGAGACTCTGCCTCTGGTTCTTGGAGATCTTTTAGCACCTTCTTGCACAAGCCTTTGTGTGTGGGTCTCCTTCTGACACTAGGCCTGATTGTGATGCTAGTTTCTGCTTCTGGGTCTTCCTTTCGGGTCTGTCTTCATCACACCCCAAGTGAGGGGCTTCCACGCCCTAGGGCTCTGTCTGCTTCTGTATCTCATGCATATTCTCTTGGCTCAAGGTGTGGATCGGGTGTAAACTTCGAGTTGATTTTCTCTGGTGTGGGTGGAATATCAACAGAAGTGGGCGTTCTCGGATCTGTGACAATGCCTAGGTGGTTCTAGGAATGGCTGCAGCACACGGGTTAGCCAGAAGCAAGGCTGCTTTCCTGGAGCAGGGTTCTAGACTGGGATCCCCAGTCTTTGATTCTTGTGATTCTGTTCCCTGCAG
Seq C2 exon
GCCAGCTGCTGCTCATAGCTCGAGCCAGAGCCACCATGACCCGCTGGACGTCCCTCAAGGCCTCTAGGCCACACAAGCCTGGCTCCTGGGATCTGGCAGCTTCCCCCCGGCGTCTGAGTACCCCAACCTTGGCCACCTTCCCCTGGAAGGCTCAGGAACCCGGGGCTGAGATGTCTTCTCAGAATGCTCCCCGGGTTCCCCAGCCCCGTCAACCCTCTGCCTCCTGGCCTAGACAGAAACAGCATCCACCATTACAGCCCCAAGCCTCAGCTAAACAAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042529-Kcnj12:NM_010603:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTAGGTCCAGGACAGGT
R:
GCTGTTTCTGTCTAGGCCAGG
Band lengths:
348-1036
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: