MmuEX0025065 @ mm9
Exon Skipping
Gene
ENSMUSG00000042529 | Kcnj12
Description
potassium inwardly-rectifying channel, subfamily J, member 12 [Source:MGI Symbol;Acc:MGI:108495]
Coordinates
chr11:60879306-60884633:+
Coord C1 exon
chr11:60879306-60879479
Coord A exon
chr11:60880168-60880452
Coord C2 exon
chr11:60882630-60884633
Length
285 bp
Sequences
Splice sites
3' ss Seq
TGTGATTCTGTTCCCTGCAGGCC
3' ss Score
11.32
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
AGCCAGTGCTCCAGGCTTACTGGATGCTGAGGGGCTGTGCCTGCAGATGCCAGGACAAGAAGCTGATCTGTCTGTAGGTCCAGGACAGGTCATTTCTTCCTGTGGAGTCTGTGCCCACTGTGCCTGGATTTGTTTTGAGTGCCATCCAGTTGCGACTCTCCTTGTCTAGTTCAG
Seq A exon
GCCAGCTGCTGCTCATAGCTCGAGCCAGAGCCACCATGACCCGCTGGACGTCCCTCAAGGCCTCTAGGCCACACAAGCCTGGCTCCTGGGATCTGGCAGCTTCCCCCCGGCGTCTGAGTACCCCAACCTTGGCCACCTTCCCCTGGAAGGCTCAGGAACCCGGGGCTGAGATGTCTTCTCAGAATGCTCCCCGGGTTCCCCAGCCCCGTCAACCCTCTGCCTCCTGGCCTAGACAGAAACAGCATCCACCATTACAGCCCCAAGCCTCAGCTAAACAAGCCCATG
Seq C2 exon
AAGTGCCCCCGCCTGGAGTCAGCCTGGGGGCAGGCCAGGGTCCACCAGACCCCGGGATGACCGCAGCCAGTCGGGCCAACCCCTACAGCATCGTATCATCAGAGGAGGACGGGCTGCACCTGGTTACCATGTCAGGCGCCAACGGTTTTGGCAATGGCAAGGTGCATACACGGCGCCGGTGCCGCAACCGCTTCGTCAAGAAGAACGGTCAGTGCAACATTGAATTCGCCAACATGGACGAGAAGTCACAACGCTACCTGGCTGACATGTTTACCACGTGTGTGGACATCCGCTGGCGCTACATGCTGCTCATCTTCTCTCTGGCCTTTCTTGCCTCCTGGTTGTTGTTTGGCATCATCTTCTGGGTCATTGCTGTCGCCCACGGGGACCTGGAGCCAGCCGAGGGCCGTGGCCGTACACCCTGTGTGCTGCAGGTCCACGGCTTCATGGCAGCCTTTCTCTTCTCCATTGAGACACAGACCACCATTGGCTACGGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042529-'1-3,'1-2,2-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.130
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF084665=IRK_N=WD(100=10.1),PF0100715=IRK=WD(100=74.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTGCGACTCTCCTTGTC
R:
AAACATGTCAGCCAGGTAGCG
Band lengths:
301-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: