MmuINT0085592 @ mm9
Intron Retention
Gene
ENSMUSG00000042529 | Kcnj12
Description
potassium inwardly-rectifying channel, subfamily J, member 12 [Source:MGI Symbol;Acc:MGI:108495]
Coordinates
chr11:60880168-60884633:+
Coord C1 exon
chr11:60880168-60880452
Coord A exon
chr11:60880453-60882629
Coord C2 exon
chr11:60882630-60884633
Length
2177 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TATTCTCCTTTCTTTTGCAGAAG
3' ss Score
11.16
Exon sequences
Seq C1 exon
GCCAGCTGCTGCTCATAGCTCGAGCCAGAGCCACCATGACCCGCTGGACGTCCCTCAAGGCCTCTAGGCCACACAAGCCTGGCTCCTGGGATCTGGCAGCTTCCCCCCGGCGTCTGAGTACCCCAACCTTGGCCACCTTCCCCTGGAAGGCTCAGGAACCCGGGGCTGAGATGTCTTCTCAGAATGCTCCCCGGGTTCCCCAGCCCCGTCAACCCTCTGCCTCCTGGCCTAGACAGAAACAGCATCCACCATTACAGCCCCAAGCCTCAGCTAAACAAGCCCATG
Seq A exon
GTGAGGTGATCGACGGAAACAGCTGTAGGAGAGAAAGTGAGGACAGGTGGCCCTGTAGGGCCTGAGGTTCCGTGGTAGGATACCTTGCATTAGACATGAGGGTTAGATCTCGACTCTCCTGTTGGAACCCGTATGTCTTGGTTGGGAGTACCTTTACCCTTTAAAAACCCTCCTTGGCCGTTAAAGGATGTCTTGAGGCTCTTGGCTGTTTTGCCCCATGCCTGACGAACTCTTTCTGTGGCTCTCAAGCTTCATAGCTGTGTCTGTGTCTGCCAGGCAGTAGCACTATGGCTCATGACATAGACCCTGGGAATCCTTCCTGAGCTGTCTGGTCTACTGGTCTCCACCCATGCCTCTGTCGGTGGCAGAGTCTGCAGGCCATGTCCCTCTGAACCTCTGATGTAGATGTGGCCAGGGATTGTGCTGTCCAGATGGGCTTGAATTCCAGCATTGTTATCTCTGCTTATAGGCAGTGGGCAAGTGTCTTCCTGTTCTGAGCTCTGAAAAAATGGGGCAGAGCTCCTCAAGGGTCCAAGGGCAGGAAGGTTTGATATTATCTGGCCTGCCCCAGGTGCCCTGGCTTCTTCTGGGATCTCTGTCTTCCTAGTGACGTCAGGTGATCGAGGGCTTCGAGCTTTACTGGGCTCTAAATTGATGAGTCATTGGGTAGGTCTTGGGGTGTATGGCACCCCTGTGATGGGAAGATAACGCATGTTCAGATCATCAGTGTTCTGCTACATCAGTGCATGCTCACTTTCAGCTCAGCCCAGCTGAGACAGGCTCGAGTCTACGGGGCTAGGCATGCTGTGATCCCTGGTTTAGCTTAGCACCAGCCCTTGTGGAGCAATGGCGAGTGTGCAAAGCCTGGGCCTGAGAAATGGGTTTGTTCTGGCCATTGCACCATTCCTCAGGCCTTCTCTGAGAGGACTGTGTGCTAGGCTGGCCTGGAGTTATGGTATTCCCTGTAGGAGGTCAAAAGTGGTCATGGAAGCAAGTAACATGTGTGGGGGCTGTGGTCCTGTGGTCCACAGCAGAGATGGGAGAAGATGTCTGTTCTGAAGTTAGGGCAACCTTAAGAGATTCAATCTGGGTGTCTACCCTAGGGCTACCTTTTATATCATATGACCCCATGATAGAAATGATACGAGTGTAGCCTACGGGCGCTTAGTGGGTGCTCTGGGCTTCTAGAGGACGAGCAGAATGAACACGGAATGTCAGACATACCGAGGCCTGGAGCCTGGCAGACCTGCTTAGACCTGGGATAGGGCAGTGGGTGACATAAATGGCTTGATGTGAGGGAGCTGACCAGTGTCACAGCTGTTATGATTGTTGCTATTGCTATTCCACTTGAGGGTCTGTGTTGGAGTGTGCAGTGTGTGGGTCAGGATTATGTGTGTGTTACTTCTAGGGCATGAGGAGGCCTGTGGTGACATCATGAGAGCAGAGCCTGATGCACAGCAGCGTGGCTGTGGGAGGGTGTGTGTGTGGAGACTGTGTGTGTGAGAGAGTCAGGGGTGTAGCGTGTGTGTGTGTATGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTAGCAGGTGTGGGGGGGCGAGGGAGTGTGAGAGGTGTGTGTGTAGATAGCAGGGGTGGACTGGGGAGAGTGTGAGGGGGTGTGGAGGGGAGAGCATATGTGTGTGGGGTGTGTGTGTGTGTGTTCGGCTGGGCAACAGGCCGTGGGCCTGCCTGGCCTGCCTGTACAGACCTTGCTGCTCCTGGGGTCACTGACTGTAAGTAGAAGAGGGGTGGAATTTAACTTGGTGCCTTTCAGGCTTCTGGTGCCTGTCACAGGGGACTGGGAGGAAGGCAGATGAATTGAGCTGGTGAGACGGCCCCTGCCTTGGTCAGGCTGGAGGTGACCAGGGTTTGGGCTATGAGGGTAAGGGAAATATGAATAAATAGTGAAAGCAAGGCCCTTTGGTACAGGAGCTAGAAGAGCTGAGAGGAAGCCAAGGTTTCTGGCTGGAGCTTCTGGGAGCTCAGGGAGACTGTTTTCCAAACTGTGAAGGTGGATTGAGAAGCAGGCTTCAAGTGGGAGGGAAGACGGGGGAGCTGTGGTGACTAAACGGAGGCTGTGTCTGTCAGTTACTGTCACGGCCCTGGATGCCTGCCCAGACAGACCTATTCTCCTTTCTTTTGCAG
Seq C2 exon
AAGTGCCCCCGCCTGGAGTCAGCCTGGGGGCAGGCCAGGGTCCACCAGACCCCGGGATGACCGCAGCCAGTCGGGCCAACCCCTACAGCATCGTATCATCAGAGGAGGACGGGCTGCACCTGGTTACCATGTCAGGCGCCAACGGTTTTGGCAATGGCAAGGTGCATACACGGCGCCGGTGCCGCAACCGCTTCGTCAAGAAGAACGGTCAGTGCAACATTGAATTCGCCAACATGGACGAGAAGTCACAACGCTACCTGGCTGACATGTTTACCACGTGTGTGGACATCCGCTGGCGCTACATGCTGCTCATCTTCTCTCTGGCCTTTCTTGCCTCCTGGTTGTTGTTTGGCATCATCTTCTGGGTCATTGCTGTCGCCCACGGGGACCTGGAGCCAGCCGAGGGCCGTGGCCGTACACCCTGTGTGCTGCAGGTCCACGGCTTCATGGCAGCCTTTCTCTTCTCCATTGAGACACAGACCACCATTGGCTACGGGCTACGCTGTGTGACTGAAGAGTGCCCGGTGGCTGTCTTCATGGTGGTGGCGCAGTCCATTGTGGGCTGCATCATTGACTCCTTCATGATTGGTGCCATCATGGCCAAGATGGCACGGCCCAAGAAGCGCGCACAGACTCTGCTTTTCAGCCATAATGCCGTGGTGGCTCTGCGTGACGGCAAGCTCTGCCTCATGTGGCGCGTGGGCAACCTGCGTAAGAGTCACATCGTGGAGGCCCATGTGCGGGCCCAGCTCATCAAGCCCAGGGTCACAGAGGAGGGTGAGTACATCCCACTGGACCAGATTGACATCGATGTCGGCTTTGACAAGGGCCTAGACCGTATCTTCCTGGTATCACCCATCACCATCTTGCACGAGATTGATGAGGCCAGCCCACTGTTTGGCATTAGCCGTCAGGACCTTGAGACAGACGACTTTGAGATTGTGGTCATCCTGGAGGGCATGGTAGAGGCCACAGCCATGACCACACAGGCTCGCAGTTCCTACCTGGCTAACGAGATCCTGTGGGGCCACCGCTTTGAGCCAGTGCTCTTCGAAGAGAAGAACCAGTACAAGATTGACTATTCACACTTCCACAAGACCTACGAGGTGCCATCTACACCCCGCTGCAGCGCCAAGGACCTGGTGGAGAACAAGTTCCTCCTGCCCAGCGCCAACTCTTTCTGCTATGAGAACGAGCTGGCCTTCCTGAGCAGAGATGAGGAGGACGAGGTGGCTACCGACCGGGATGGCCGCAGCCCTCAGCCCGAGCATGACTTTGACAGACTGCAGGCCAGCAGCGCTGCCCTTGAACGGCCCTACAGACGGGAGTCGGAGATTTGAATGCCCTTGGCTTAGATGCAGCACCACCCTGACCACAATAGGTCCCATGTCCCTTGGGGGCCTGCGTTTGAGCAGAGCAGGCCGAAAGCCTCGGGTCACAGACTCAGTAGCATCTTAGTCTTTTTCATGTTTTTTCGCAGTAGCTTGGGAAAGTTGGCGGGAGCGTGGATGGCCAAAATGACTGGCTCACGGCCTCGGAGGCTGATGTATACCCATGGGCAAGGAGGTGACTTCTTGGGGTAGGGTTGCTCAGGAGTTAGGGACTCTGCTGGAGGCCTTAGGTGCAGGTCCCAGCCCCGGTGGGAGGAGGCTGTGTATGTACACTTCATTGGTTTTTAACTTGGGCAAGACTGTTTACAAACAAAAACAAACAAACAAACAATCAAAAAAAAAACCCACCCCACAAAACACAAGAAAACATTAACAGGTGGTTCAATTTTTAAAATTCCTGGTGTGGGGACAGTTGGAATTCTACTCAGCGCTGCCAGGCAAGCAGCTGGACGGAGAACCCTGAGGGTTCTCAGAGGTCTGTTTTCTCCCTCACGTGGGCCAGGGCCTTAAGCGAGTTGTCATGCTTAAGGATGAATCAGGCTGCTTGTGACCATGTTAACGATTCTAATAAAGTGTCTGGATGTCTCTTGGGGGTGGGGCCCACTAGGGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042529-Kcnj12:NM_010603:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084665=IRK_N=WD(100=10.1),PF0100715=IRK=WD(100=74.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: