BtaINT0079666 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020061 | KCNJ12
Description
Bos taurus potassium inwardly-rectifying channel, subfamily J, member 12 (KCNJ12), mRNA. [Source:RefSeq mRNA;Acc:NM_001024690]
Coordinates
chr19:35983091-35991013:+
Coord C1 exon
chr19:35983091-35983209
Coord A exon
chr19:35983210-35989255
Coord C2 exon
chr19:35989256-35991013
Length
6046 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CTGCCATCCTTCTGTTGCAGGAG
3' ss Score
10.6
Exon sequences
Seq C1 exon
GGTCTTCCAGCCGCTGAGGCCTCTCCAGCCGGTGGGGCAATGGCAGCCACAGCTAATGCAGCCTTGAAGACGGTCACTTGCTTGGTGAGCACCGTTACTTAGAAGATAGGGCTCCAGAG
Seq A exon
GTAAGATTGGGGCACGGGTGTCCACCTGTCTACCCAGTCATCCTTCCATCCAGACACTCATCTCTTTACCCACCTGCCCATCCACCCAGCTATGTGACCTCTCGTCCACCCTCTATCCATCATCCATCCATCTAACTCTTCATCCACCTACCCAACCCATCCAGCCATCCTTCCATCCATTCACCTCCCCCACCAGCTATCCAGTCACCCATTCATCCATCCATCCACCCACCCACCCACCCATCCATAGATTCATCTGTCCATCTGTCCTTCCACTCATTCATCCATCCACTCAAACATCCATTCACCCACTCTGTCCATCTGTCCATCCATCTGCTCAGTCCATCCGTCCATCCACTAATGCACTCAAACATCCATCCACCCAACTCATCCAGACCTTTCTCACCCACCTAACTGACCCACCCCTCTAGTCATCCTCCATCCATCCATCCACATGTCAGCCCCGTTTATCCATCTACACGCTTGACCACCCATCGGTACATGCAACGGTCTCCTCATTCATTGATTCATCCATGCCTCTGTTCAGCAGCTTATTCCTTTGTCCTGTCTGAGCAGCAAACATTTACTGGGTGCCCGCTCTGTTCCAGGCCTTCCTCAATCTCTCTGGACTTCTGAGATTGGCCAGAGATGGGGCCAAGGCAAAACCAACTCTCACACAAGGTGGAAAAGCACCTTCTGGTCCTGACAGAAGAAGCCCAGGGCCAGAGAATCTAAAAGGGCCTCAGGGAAGTGGTGGGCTTCCACTGATTCCTAACCGATGGATTTCCAGCATTCCCATTAGCTGTGATTTGGAGACTGGACCACGTGGGGCGAGGGTCACCACAGGAACATCCATAAGGAGCCTGTTGCAGTGTCCAGATAGCAATGCCTGGACAGGAGGGGTCTGTGGGCAAGGAGGGGGAGGATGGCTTTGATCATTCAGGAGATAAAATGCACAGGACCTGGGGAGGGAGTGGATTTGGGGGCTGAAGAGGAGGGAGGAGGCCAGGCTTGTTGACTGGGGTGACTGGGGAAATGGTTGGGCTGCCCAGTGACCTCACAGGGTGCGGGGGGTGTGAGGAAAGAAGGAGACTGAGGGGGGAGGTAGGGGGAAGGGGGTCAGCTTTGGAGAGGAGGAGGAGCCTGTTGGCTCTGCGGTGCTGGGAGGACGTAGAGGGCGTGGGCTCAGGGTTGGGAGTCCCTGCTGCGGAGCAGCCCAGAGGCCTGAGGAAGGCCCAGGCCTGAGGGGCCCTGCGAGCTTGGTAGAGCAGGTTCCCCAAGTGTGCTCTTTGTAGTGGGGAGCTGCTCCCTGGCCTGCCACTGCACCAGGAAAGACTGGTGTTGGTGGCTGGAAACTGGGCAGGTGGGCCTGGAAGTGGGGAGGGCCCAGGGACAGCTGAGCGTCGGCCAGGCGCATCACCAGCACACAGCTCTCCTCAGGCCTCACACGGGGCCCCACCCTGAGGGCCTGCACAGTGTTGACTCCAAATGTTTGCAGCCTGTGGGTGACATCTGGGGAAGGGGAAGGACTGTGTCTGGGAAAGGTGGGCAGGCACAGGAGATGGCCATCATCACTGCAGACTGTGAGGGCAGAGGTGTTGGGCTCTCCCCAACCAGCCTTAGCCTGCTTACTGGACCCTGAGGTGCCAGCCTGCCCTCCCCATGCCAGGGATGCCCCTCTCCTGCCTTTGCACCCTGAGCTGCCCTTTCTCCCTGTGGTGCACCCTCCAAGTGTGGCCCAGACCCCTTGCTCCCTGTGTGACTGGGTGAGGCACCCTTCTCAGAGCCTCCGTCTCCCCACCGGCAGATGACGGGTTACATTTTTCAAGCCCTTGTGCTGAGTCTGATAGATAATGTCTGGATTAGAAAAGAGGGCGTGGCTACCACAGGCTGTAGTGATAAAGTGCTCTGTGATGGATTAATGATGTCTGCCTTGGGCAGGGACCAGGAAGGAGGTGTTTGTAGGTTACATGCTAGCTTTCCCTGAGACAAGTGCTTTGTAAGGATTCTTCCAGTTGACCATGAGGTGGTGAGTGCCCCTTCCCTGGATGTTCCAAGCGGGGCCTGAATGGCCATAGATCAGGGGCGCTTGCAAGGGTCTTGCCTCTGCTTTTGTGTGCTGAGAGAGGGGCTATTTGTGTCTCATCACCACCTGGCATTGCAGGAACCCTGAGGACTGAGGCTAGGAATACAGTGTCATGTCCACAATCTGGCCTTGGGGCTTGGAGGAGATAAGGAGATGGGAAGTTGAGTTCTCTTCAACCTCCCACACTAGGTGCTCACTTATGAAAGGCTGTATGACCCTGGGTAGGTGACTCAAGCTTTCTGAGCTTCAGTTTCCTCACCCAGAAAGTCATAAGAAGGGATTACATGGGCTATTTGAGCTCTTAGTGCCTGGAAGGTAGTAAGTGCCTGACAAATACTGATCACTCTGTTCACACCTATGCAGGGGTCCTGCCACCTGGGAATCCTCCCAGGGAGGGGGACATTGAGCGCCTCCTCAGTGGCCCCTCTATCGACCCAACTAGTCAGTGCTTTCTTGGCTTTGCCCTGGTCCCCTCTCGGATGCTGCAGAAACCTGAGGCCCAGAGCCTCAGGGGACCTGGCAGAGGGTGGCCCTCTCCATCCGGAGGCACCTCCTGATGACTTGGCCCCACCGGTAGTCATGCGTTAGCTGCCTGCCTAAAAGCTCCCAGCCCAGTCCCTGCTGGGGCACTGAGTCTGCTGGGTGCCAGAGCCTCTGTGCGTGGGTGCTGTGGCTGGCGGGCATGCCGGCTCTGGAGACGCTGGGATCAGGACAGGTTTGCCACCCCTTGGGGCTCTCTGGGTCCAGCCCACTGAGGGTGCCTCACACTCCACCTCTGCTGCTGTAGTTACCTGTCCTGGCTCAGGTGGGAGATCCCAGTGCCTGTCTCCCCTTCCCCTCCTAGCAACATCTGGGACCCCTGCCAGTCAACCTGGGCTTCCACTGCTGTGGTGTTAACTATTGTCTTTATCATGTATCTCCTCCTGGCCCATGACGTGTTTTGTGACCTGGAACAAGTCTCAGCCTCAGTTTTCCCATTTATAAAATGGAGAGCTAGCCTCCTTGCTTGCTAAGGCCTCTTCCAGCAAAGCGAATCTAGCTTCCTGTCTGTCTAATCTAACTGTATGTACCCGCTGAGCAGGAGCTAGATAGACCTGTACATCCCTGGTTGAGGATGTTGTCCCACTTTTCTTTCTTTTTTTTTTTTTTGGCCATGCCCTGCAACTTTTGGGATGTTTGTTCCCAGATTAGAGATGGGATCCAACTTAGGTCCCCTGCAGTGGAAGTGCAGAATCCTAACCACTAGACCACCAGGGATGTCCCCCACATTTCTTAAACTGAGTCCTTAAAGACCACAGAGCCCTGCAACCTTGCCTTCTGTGTATGGAGGGTCCCTGCATGTTTGGCAAGTTTGTGGTGCCAGGGCTCCTACTGTGGGTCTTTTTCTCAGCCTTTCTTGGTGGTGGTGTGTTTACCAAGTGCCTGTGAGGACTCCCCACACCCCTGGCATCTCATGCACACACACACATACACACATGTGCACACAGAGCTGTCTGCTCTGTCTCTGCTCCTTAGTTTCCAGGGGTCTTTGCTTGGGTGACTTTGCTCCAAGTACCAGTTTCCAGCTCTGAATAGTGGGGGAGTGGGCTGTGAATGTGGCCTGTGGATTTTCTCTATGGTTTTAGGAGAAACATCAATAAAATAGGTCTGGGTGGGGCATAGGCACCCAGCCCAGGCAGAGATGCCAGTGGTCATTGTGATACCCGCCACCTGACTGGGAGCTGGCCCAGTCACAGCCTCCATGTGAGGCTGCCCAGCTGCTGGGAACAGTCGTGCCAGTCTGGGCTCTCCTGGCCTTTGATTCTTTTGATTCTGTCCCCGTTACAGGCCTCAAGCTGCTCAGAGCCTTACCTGGAGCAGCCGTGACCTGCTGGACATCCCGCAAGTTCTCCCGGCCACACAGACCTGCCCCTTGCAATCCGGTGGCATGCTGCAGGCTTCTGAGTGCCCCATCCTGGTCACCTCTGCTTGGAAGGCCCAGGAATCTTGGGCTGGGCTGTCTTCCAGGCATGGTCCCTGGGGTACCCCCACCGCTGGCTCCTTGCCTCCTGGCTCAGGCAGAAGCAGTGCCCACCATTATAGCCTCAGGCCTCAGCTCTTCAGACCCAGGGTGAGGTAGTCAGCTGCAGCAGCTGTAGGGGAGAATCGCAGTGTGAGGAGAGCTGCCGCAGAGCCTGGGGTCCCCACGGTGGGAGACACTGTGTCAGACAGAAGTAGTTCTGAGTTCAGCTCTCCTGCTTACTAGTTATGTGATTTTGGGAAAATCATTTGACCTCTCTGGAACTCCATCCAGAGAGTAGAAACAGCCACAGTAGTTACCTCCTTGGGCTGCTGAGGAGTGACCCAGGAGTGTTTGCTGACGGGTCTGGCCTGCTCTCCTTGTGGACGGATGAGCTGGGAGGATTGTGTACTTGCCAGACCTGGGGATCCAGTGACACTGGCAACTGGATGGCTCCTGGGAGGGGTCTGCAGCCTGGCTGGTTGAGTGGGATCCACCTTCACCTTCTCCCAGGTGTTTGGAGCAGAGGTCAGAGGTGGTGCCCTCTCTGCGGCTCTGGCTGTACCCCGTCCCACAGACCAGGGCTGATCCCAACTTAGCCACCTCCTGGCTGTCACCTCCATTCCCTTTCTACTGGTCTGGCTGCCCTGGGACCTTCTCTGGGGCCTCAGCATCTCAGTGCATTCAAGTGCTCCCAGGCTCACCTGGCTCTGACCTCATGGTGCGACTGGTTTGGAGTTGGAGAGGCGTGGGGCCCATCAGTGCCCTGCCACACCATTCCCGCTTGGTGCCTGACACAGAAAGCCACATGGCCTCCATGCCCACCCATGGGCCCAAGTGGAGTTGGGATCTCCCGTCTACAGATGCTGCCCCAGAACCAGCAGGGCCATGGGGAGGGGTGGCTTCCTGTGCATCCGGGGCCTGGATGCTTGCCCCCAGCAGTTAGAATGGGATTTGTCTGGCCGTGGGAACAGTGCTGGGGGTGTGGCTTGGGACCGACCACCCAGTGTGTGAGTGTGTGTGCCAACCAGGTGCTGTGCCAAGTGGGCTGAGGACGAGGGCTCTTATTTAGAGCTGAGGAAGGCAGGGGTGGCGGAGGCCCCCAGGCTGAGGTCAGCAGTCAGTGACCCCTCTGGAGGCTGACTCATGGGCCCCCTTCTAGCCACCTTTGGTGATGGGGAGGCCACAGGCCTAGCTTATGGGCAGTGAGAATAGGCACCTGGGGGAGAGTGGGAGTGTCAGGAGGGTGGTGGGTCCAGCTTTGGGTGTCCATCAGGCCCAGGTCCAGGCCCCAAGAGTGAAACTGCTGTGAACAAACAGCAAACCCCTGTACTCAGGGAGCTGGTGCTCTTGTGGTGGGATGGCTTGTGCAGCCCCGAGCAAGCTGTTGTTGTGGTCACTGGTGTTATGGGGTCAGGGAGGGATGTGTGGGATTCGAGTGGGGTTCTGGGGGGTGTACAGTTTTCTCAGGTGCAGGGAGGCCCTGGGAGATGCCCCCGAGGCATCAAAGCCAGGGCTTAGAGGAGGGTGTCCAGGTGGACCCAGGGGCGAGCAAGGGAAGGCTGGAGACGAGATGGACTGACTCCTGGTGGCTGCCGTGGGCACTGGCACCAAGCAGGAAGGCCAGCATGGTGGCTTTCATGCTGGTCTTCATGGGTGATTTCAAGGACTCAGGCCAGGAGGGTAGAAGAAGGAGCCGGATCCTGAATCCTGAATATATTGGAAAGCAGAGCCCTTGGTGGGAAAAAGGGGGACTGAGGAAGAACCCAGGGCTCTTGTCTGGAGCAGCTGGGAGTTTGGAGGCAGGCGGGGAGCTGGCTGAGATGGGAGGGAGGACCAAGAACTGGTTGTGGGTGAGTCTGGGTCTCCGCAACCATGGCTGGGCCGGGATGGAGGCGTGGAGGTTGGGGGGCAGCTACTGCGCCAGCACCGCCATCAGCCCTGCCATCCTTCTGTTGCAG
Seq C2 exon
GAGCTGCTCAATCCTGAGCCAGTCTGGGGTCAAGCGGGGTCTGCTGCCCCCACCTCCTGGATGACTGCGTCCGGCCGCACAAACCCCTACAGCATCGTGTCTTCAGAGGAGGACGGGCTGCGCTTGGTCACCATGTCGGGCGCCAACGGCTTCGGCAATGGCAAGGTGCACACGCGGCGCAGGTGCCGGAATCGCTTCGTCAAGAAGAATGGCCAGTGCAACATCGAGTTCGCCAACATGGATGAGAAGTCGCAGCGCTACCTGGCGGACATGTTCACCACGTGCGTGGACATCCGCTGGCGCTACATGCTGCTCATCTTCTCGCTGGCCTTCCTCGCCTCCTGGTTGCTGTTCGGGGTCATCTTCTGGGTCATTGCTGTGGCCCATGGGGACCTGGAGCCTGCTGAAGCCCATGGCCGCACGCCGTGCGTGCTGCAGGTGCATGGCTTCATGGCGGCCTTCCTCTTCTCCATTGAGACGCAGACCACCATTGGCTACGGGCTGCGCTGCGTGACCGAGGAGTGCCCGGTGGCGGTGTTCATGGTGGTGGCGCAGTCCATCGTGGGCTGCATCATCGACTCCTTCATGATTGGCGCCATCATGGCCAAGATGGCGCGGCCCAAGAAGCGTGCACAGACGCTGCTATTCAGCCACAATGCGGTGGTGGCGCTGCGTGACGGCAAGCTCTGCCTCATGTGGCGCGTGGGCAACCTACGCAAGAGCCATATTGTGGAGGCCCACGTGCGGGCCCAGCTCATCAAGCCCCGGGTCACGGAGGAGGGCGAGTACATCCCGCTGGACCAGATCGACATTGATGTAGGCTTTGACAAGGGCCTGGACCGCATCTTCCTGGTGTCTCCCATCACCATCCTGCACGAGATCGACGAGGCCAGCCCTCTGTTTGGCATCAGCCGGCAGGACCTGGAAACGGATGACTTCGAGATCGTTGTCATCCTGGAGGGCATGGTGGAGGCCACGGCCATGACCACGCAGGCCCGCAGCTCCTACCTGGCCAACGAGATCCTGTGGGGCCACCGCTTTGAGCCTGTCCTCTTTGAGGAGAAAAACCAGTACAAGATCGACTACTCGCATTTCCACAAGACGTACGAGGTGCCATCCACACCCCGCTGCAGTGCCAAGGACCTAGTGGAGAACAAGTTCTTGCTGCCAAGCACCAACTCCTTCTGCTACGAGAATGAGCTGGCCTTCCTGAGCCGCGACGAGGAGGACGAGGTGGACGGAGAGCAAGACAGCCTCGGCCCCCAGGCCAGGCGCGACTTTGACAGGCCGCAGGCCGGCACAGCCCTTGAGCAGCGGCCTTACAGACGGGAGTCTGAGATCTGAGCTGCCGTCGGTCGGCCGAGGTGCAGCATCTGCCCCGCCAAGGAGAGGCCTGAGCCCCTCGAGGGCTCTGGGCCTGAGCAGGATGAGCTTGGGCCCTGGTTGCAGACTCAGTAGCGTTTTAGATGTTTTATGTTTCTTTACAACGCCTGGGAATGTTGGCGGGAGAGTGGGTGGCTTGTGCTGCCTCCAGAGCTGGGGAAGGCCCAGGGGTGGGGAGGTGGCCTCCGGGCACTGGGCTGCAGGAGCCAGGGCCTTCTGCCTGAGGAGGGAGCTGCAGCCTGTCCAGAGACGGCTGACCAGCCACCTGACCTCTGAGGGCGAAGGCCAGCAGGCAGTAGGGTGCCTCACTGGTTTTTACCTTGGGGAGAAACACCAGTTTCGGCTTTCTCAATCTTAGTTTGAGTAAGACTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020061:ENSBTAT00000026726:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF084665=IRK_N=WD(100=10.5),PF0100715=IRK=WD(100=78.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development