HsaEX0033013 @ hg19
Exon Skipping
Gene
ENSG00000184185 | KCNJ12
Description
potassium inwardly-rectifying channel, subfamily J, member 12 [Source:HGNC Symbol;Acc:6258]
Coordinates
chr17:21311831-21323179:+
Coord C1 exon
chr17:21311831-21311952
Coord A exon
chr17:21315748-21316032
Coord C2 exon
chr17:21318599-21323179
Length
285 bp
Sequences
Splice sites
3' ss Seq
TGTGATTCTGTTCCTTGCAGGCT
3' ss Score
10.34
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GATGTTCTAGTGACTGGATCCTTTCCAGTTGGTGCCTGGGAAATGGCAGCCACTACTAATTCAGCCTTGAAGACAGTACCGTGCCCACTCAGCACCATTACATAGAAGATAGAACTCAAGAG
Seq A exon
GCTTTGAGCTGCTCGGAGCAGGGGCTGGAGCAGCCATGACCCGCTGGAAGTCCCTCAAGGCCCCTGGGCCACACAAATCCAGCCCCTGTCAGCTGGTGGCCTCACGCCGGCGTCTGAGTGCCCCGGCCCTGGCTGCCTCTTTCTGGAGGGTCCAGGAATCTGGGGCTGAGCCCCCTTCCCAGCACAGCCTCAGGGGTCCCCCCTGCTGCCGGCTCCCTACTTCCAGGCCCAGGCAGAAGCAGTGTCCACCATTCCGGCCCTGCGTCCCAGCTCCTCAGCGTCATG
Seq C2 exon
GAGCCGCCCTGCCTGGAGCTAGCCTGGGGGCGAGCCAGGGTCCCCCAACCCCCGGGATGACCGCGGCCAGCCGGGCCAACCCCTACAGCATCGTGTCATCGGAGGAGGACGGGCTGCACCTGGTCACCATGTCGGGCGCCAACGGCTTCGGCAACGGCAAGGTGCACACGCGGCGCAGGTGCCGCAACCGCTTCGTCAAGAAGAATGGCCAGTGCAACATTGAGTTCGCCAACATGGACGAGAAGTCACAGCGCTACCTGGCTGACATGTTCACCACCTGTGTGGACATCCGCTGGCGGTACATGCTGCTCATCTTCTCGCTGGCCTTCCTTGCCTCCTGGCTGCTGTTCGGCATCATCTTCTGGGTCATCGCGGTGGCACACGGTGACCTGGAGCCGGCTGAGGGCCGGGGCCGCACACCCTGTGTGATGCAGGTGCACGGCTTCATGGCGGCCTTCCTCTTCTCCATCGAGACGCAGACCACCATCGGCTACGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184185-'1-2,'1-1,3-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF084665=IRK_N=WD(100=10.4),PF0100715=IRK=WD(100=77.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAAGACAGTACCGTGCCC
R:
CTTCTCGTCCATGTTGGCGAA
Band lengths:
302-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)