MmuEX0025065 @ mm10
Exon Skipping
Gene
ENSMUSG00000042529 | Kcnj12
Description
potassium inwardly-rectifying channel, subfamily J, member 12 [Source:MGI Symbol;Acc:MGI:108495]
Coordinates
chr11:61065804-61071131:+
Coord C1 exon
chr11:61065804-61065977
Coord A exon
chr11:61066666-61066950
Coord C2 exon
chr11:61069128-61071131
Length
285 bp
Sequences
Splice sites
3' ss Seq
TGTGATTCTGTTCCCTGCAGGCC
3' ss Score
11.32
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
AGCCAGTGCTCCAGGCTTACTGGATGCTGAGGGGCTGTGCCTGCAGATGCCAGGACAAGAAGCTGATCTGTCTGTAGGTCCAGGACAGGTCATTTCTTCCTGTGGAGTCTGTGCCCACTGTGCCTGGATTTGTTTTGAGTGCCATCCAGTTGCGACTCTCCTTGTCTAGTTCAG
Seq A exon
GCCAGCTGCTGCTCATAGCTCGAGCCAGAGCCACCATGACCCGCTGGACGTCCCTCAAGGCCTCTAGGCCACACAAGCCTGGCTCCTGGGATCTGGCAGCTTCCCCCCGGCGTCTGAGTACCCCAACCTTGGCCACCTTCCCCTGGAAGGCTCAGGAACCCGGGGCTGAGATGTCTTCTCAGAATGCTCCCCGGGTTCCCCAGCCCCGTCAACCCTCTGCCTCCTGGCCTAGACAGAAACAGCATCCACCATTACAGCCCCAAGCCTCAGCTAAACAAGCCCATG
Seq C2 exon
AAGTGCCCCCGCCTGGAGTCAGCCTGGGGGCAGGCCAGGGTCCACCAGACCCCGGGATGACCGCAGCCAGTCGGGCCAACCCCTACAGCATCGTATCATCAGAGGAGGACGGGCTGCACCTGGTTACCATGTCAGGCGCCAACGGTTTTGGCAATGGCAAGGTGCATACACGGCGCCGGTGCCGCAACCGCTTCGTCAAGAAGAACGGTCAGTGCAACATTGAATTCGCCAACATGGACGAGAAGTCACAACGCTACCTGGCTGACATGTTTACCACGTGTGTGGACATCCGCTGGCGCTACATGCTGCTCATCTTCTCTCTGGCCTTTCTTGCCTCCTGGTTGTTGTTTGGCATCATCTTCTGGGTCATTGCTGTCGCCCACGGGGACCTGGAGCCAGCCGAGGGCCGTGGCCGTACACCCTGTGTGCTGCAGGTCCACGGCTTCATGGCAGCCTTTCTCTTCTCCATTGAGACACAGACCACCATTGGCTACGGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042529-'2-2,'2-1,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.130
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF084665=IRK_N=WD(100=10.1),PF0100715=IRK=WD(100=74.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTGCGACTCTCCTTGTC
R:
AAACATGTCAGCCAGGTAGCG
Band lengths:
301-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types