MmuINT0085923 @ mm9
Intron Retention
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29434615-29434922:-
Coord C1 exon
chr6:29434811-29434922
Coord A exon
chr6:29434717-29434810
Coord C2 exon
chr6:29434615-29434716
Length
94 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TCCCCCTCCCCCTTTTCCAGGTG
3' ss Score
13.24
Exon sequences
Seq C1 exon
TGTGCACGTGACTAATGATGACCGGGGCCGGAGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACCGTGGCTGTGAGGCTGCTGCAGGGCAGGACAGTCATG
Seq A exon
GTGAGCTAAGGACCCAGGGAAGGTCAGTGCTACACAGTTCACCTGTCTGATCCGACATGGCCCCTTCCTTCCCCTCCCCCTCCCCCTTTTCCAG
Seq C2 exon
GTGGACCAGCACACAGTGACCTTGCCCTTCCTCCGGGAGCCACTGCTGTACATTGAGCTTCGTGGTCACACTGTGATCCTGCATGCCCAGCCTGGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-Kcp:NM_001029985:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(24.7=100)
A:
NA
C2:
PF0009420=VWD=PD(9.8=57.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTAATGATGACCGGGGC
R:
ATCACAGTGTGACCACGAAGC
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: