RnoINT0078153 @ rn6
Intron Retention
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56763393-56763697:-
Coord C1 exon
chr4:56763586-56763697
Coord A exon
chr4:56763495-56763585
Coord C2 exon
chr4:56763393-56763494
Length
91 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CCCTATCCCCTCTTTTCCAGGTG
3' ss Score
11.85
Exon sequences
Seq C1 exon
TGTGCACGTGACTAATGATGACCGGGGCCGGAGGGGTGTGGCCTGGACCCAAGAGGTAGCGGTGCTGTTGGGAACCGTGGCTGTGAGGCTGCTGCAAGGCAGGACAGTCATG
Seq A exon
GTGAGCCAAGGACCCAGGGAAGGTCAGTCCTACCCAGTTCACATGTCTGACCCGACATGGTCCCTCCCTCCCCCTATCCCCTCTTTTCCAG
Seq C2 exon
GTGGACCAGCACACGGTGACCTTGCCCTTCCTTCGGGAGCCACTGCTGTACATTGAGCTTCGTGGTCACACCGTGATCCTGCATGCCCAGCCTGGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855:ENSRNOT00000050795:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(24.7=100)
A:
NA
C2:
PF0009420=VWD=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTAATGATGACCGGGGC
R:
GGTGTGACCACGAAGCTCAAT
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]