MmuINT0086127 @ mm9
Intron Retention
Gene
ENSMUSG00000029475 | Kdm2b
Description
lysine (K)-specific demethylase 2B [Source:MGI Symbol;Acc:MGI:1354737]
Coordinates
chr5:123437671-123439101:-
Coord C1 exon
chr5:123438877-123439101
Coord A exon
chr5:123437816-123438876
Coord C2 exon
chr5:123437671-123437815
Length
1061 bp
Sequences
Splice sites
5' ss Seq
TTGGTGTGT
5' ss Score
3.29
3' ss Seq
CTCTGGTTGGGTCCCCGCAGCGT
3' ss Score
7.45
Exon sequences
Seq C1 exon
GAAAATGGTTTCCTAGGACTTTGCAAACGGATCTGCTTAAGTGTTGGTGCAAAACTTTGTAGATATCGGCTCTGGCTTGCTCTATTTATTTATTTTTTTGCTTTCTTTTCTTTGGTCTTCCCTCCTTTCCCCCTCCGCCAAAATGCAGGGGGCAGGAGTGTTGACAATTAATTGGTGAACTCTCCTAAAAAAATGGAGGCAGAGAAAGACTCTGGAAGAAGATTG
Seq A exon
GTGTGTAGCTTTTTTTTTCTCCCCCAAATCTGTATCTGGTATATGATCGATTTATCTATCTATTTATTTTTTTGGTTGTTTCTTGCTGCCTTTTCTTTCCTTTTCTGTATTTTGCAAGAGGACCGGAAAAAAATAATAAATTGCATGCAAAAGGAAGCAAGCAGCTTACTCCTCCAGTCTCTTGTGAGGCTCAGGGTCTCAGACACTTAAGTGGGGAGGAGGCAACGCCGAAAGGCGTGGAAGGGACTGAGCGGGCTCGGGGTTCGCCTGGGATCTGGGGGGCTGCGGGGCTCGGTGCTGAGCGGCGGAGGGAGGAGGAAGAAGGATGCGGGGAGTGGTGGGGGAGTCTCCTTAGGAAGTGAGTGTGCGCGCGCGCTCGTGGGGAGATGAGGCAGCTGCTGGTGCGTTTTGGGGTCTCTGATAGAAGCTTTGTGGTGGGCTGGCTGCCTCTCTCCCCCCACATTCTTAACCTCCTCCCCTCCCCTCCTCTTCTTGCACTAGCGGTCGGTCGGCGGGGGCCGTTAGGGTCTCAACCCTTCCGTTTCAGCTTTCCAGCTTTTCTGTAGCTCGGGAGCAGCTCCAGCCTTAGTAATGCCGCCGGCCCTGGGTTCCGGCTTCCCGGGTTGGCCGCCGTGGCCGCCAGGGCTGCTGTTACCGCGGAGCCGGTTGCTGCAGCGGCTTCTCTCGGGGCCTACATCTGCCCCGCCAGCTCATACCCGGAGCCCCCTTCAGGGGTTACATAACCAGGCTCCCAGTCGAGTGGGCAAAGCTTAGCACATCACTTGGCGTGGGGGCAGAGGAAAGCCCCCAAATACCATTTCCATAGCTTCCAAAGATGCAAGAAGGGATTGCTTCGTTTAAGGGCAGTCGGGCCTTGGGGGTGTGAGCCCCTTTTTCTGCTTTCCAGCATCTTTGGCATTTGCGCAAAGTTGCTCAGATTGCAATGCTGGGGTGCAGTGGGCGCGCGACTCTTGCACCTGTTCTTGGTGGGCCCAGGGTGAGAGGAGACCCCCCCAAGTCCTCTCAGTAATGTCCGGGGTTCTCTGGTTGGGTCCCCGCAG
Seq C2 exon
CGTGCGATTGACCGCCAGAGATACGACGAGAACGAAGACTTGTCGGACGTGGAGGAAATTGTCAGCGTCCGTGGCTTCAGCCTGGAGGAGAAGCTACGTAGCCAGTTATACCAGGGGGACTTCGTGCATGCTATGGAAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029475-Kdm2b:NM_001003953:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTTGCAAACGGATCTGC
R:
GCCTTCCATAGCATGCACGAA
Band lengths:
351-1412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: