MmuINT0086538 @ mm9
Intron Retention
Gene
ENSMUSG00000007670 | Khsrp
Description
KH-type splicing regulatory protein [Source:MGI Symbol;Acc:MGI:1336214]
Coordinates
chr17:57165303-57166337:-
Coord C1 exon
chr17:57166266-57166337
Coord A exon
chr17:57165361-57166265
Coord C2 exon
chr17:57165303-57165360
Length
905 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
GCCCCTCTTCTTCTCCACAGATA
3' ss Score
12.47
Exon sequences
Seq C1 exon
TTATTGGCAGAGGTGGTGAGCAGATAAACAAAATCCAGCAGGACTCAGGCTGCAAAGTTCAGATCTCACCAG
Seq A exon
GTATGACCCTCCATCTGTAAAGTTGCCTGGGACCCCAGGGCAAAGCTGGCTCTGTTGTGTGGATATCTCCTGCATAAATACAGAGGCCACAGTGGAAATACTTCTGTATTTTTGTAATGTGTGGGGTGAGCACTTATCATGGCACACACGTGGAGGTCAGAGGTTAGCTCTCCCCCTGTCACGGAATCCAGATACTGAACTTAGGTTATCAGGTTTGGTGATGAGCACCTCTGCTCCCTGAGCCATGTCCCTGCCCTTGTTTTTCCTCTTTGCATTTGGGATGGTCTAGAGGAATGTGGGCATGGGCGCGAAGGCACCACTTTTCCAGGTGGCAGGCTCTATGGTGTCACCTCTCAGTGCTGCAGGAAGCAGAATGGCAGGCTTTCCGGCTGCTTGGTCTGCTCCTGTGGGAGGTGTACATGGGGGTCCCTTTAGATTTGAGCCAGGCTCCTGGGTGCTGTTAAGAGTAATCCTGAGTCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTTGTCTACAAAGTGAGTTCCAAGACAGCCAGGGCAATACAGAGAAACCCTGTCTCGGGAAACAAAACAAAACCAAAAAAAAAAGTAATCCTGAGCTGATTTCTGGAGTCTCCCCTTTCTTCACTATCAGTCCTCTTGCTTTGGCCTCTACGTGCGAGAAGGGGTGTGGTGCTCTGCTTGTCTCCCTCCCAAGTTCTGTCTTCCCCCACTAGATTTTAGAGAAGCAGTCTTCCTAGCATGTTGTGGCAGGGGTGAAATGATTTGTAGAAGAGGGCTGCAGGCTGTTCTGGAAGTTTCCTGTTCCTGCTGTAGCAGCCCTCTTTGTACTGAGCCCCTCTTCTTCTCCACAG
Seq C2 exon
ATAGTGGTGGCCTCCCTGAGCGCAGCGTGTCTCTGACTGGAGCACCTGAGTCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007670-Khsrp:NM_010613:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.950
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
NA
C2:
PF0001324=KH_1=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: