GgaINT0039155 @ galGal3
Intron Retention
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19595487-19595849:+
Coord C1 exon
chr8:19595487-19595558
Coord A exon
chr8:19595559-19595785
Coord C2 exon
chr8:19595786-19595849
Length
227 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
AAACTGATTTTATTTTATAACCC
3' ss Score
-1.49
Exon sequences
Seq C1 exon
TCATCGGCAGAGGCGGAGAGCAGATCTCACGCATACAGCAAGAGTCAGGATGTAAAATACAGATTGCACCTG
Seq A exon
GTAACTATTTCTGGGTTTTTTTGTTTGTTTGTTTTTTGTCTGATTGCCTTCATCCATACCTTCATTTAAGGTACATTTTAATTCGTGTTCTAATCACGATTATCACAGTTTAAAGAAGCACAAAGTATTGTAATAGAACAAATTCTTTACTTCAGTGACCTTCCAATTGTTTGTGTATTATGTCTTCATCAACTCTTGCTGACTGCTAAACTGATTTTATTTTATAA
Seq C2 exon
CCCTAGATAGTGGGGGCCTGCCTGAAAGATCATGCATGCTAACTGGAACCCCAGAATCTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939:ENSGALT00000014525:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.573 A=NA C2=0.730
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
NA
C2:
PF0001324=KH_1=FE(32.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]