HsaINT0066545 @ hg38
Intron Retention
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77966694-77966955:-
Coord C1 exon
chr1:77966884-77966955
Coord A exon
chr1:77966752-77966883
Coord C2 exon
chr1:77966694-77966751
Length
132 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
CTGTTTGTTTTAAATTGTAGACA
3' ss Score
8.87
Exon sequences
Seq C1 exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGCATACAACAGGAATCTGGATGCAAAATACAGATAGCTCCTG
Seq A exon
GTAATGTTACATTCTCATGGTATTTTCAGTGTGACTAGAAAACTAGCTTTTTTTTTTTTTTAAGCCTTCTAGTAACAATAATGCTACTTTTAATCTTTTGACCTGAAGTTATCTGTTTGTTTTAAATTGTAG
Seq C2 exon
ACAGTGGTGGCCTTCCAGAAAGGTCCTGTATGTTAACTGGAACACCTGAATCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613:ENST00000294623:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.767
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
NA
C2:
PF0001324=KH_1=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATTGGCAGAGGAGGTGAACA
R:
TGGACAGATTCAGGTGTTCCAG
Band lengths:
130-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development